Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0075
         (717 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)                28   6.6  
SB_47841| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)                28   6.6  
SB_2761| Best HMM Match : zf-TRAF (HMM E-Value=0.26)                   28   6.6  
SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30)                    28   8.7  

>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2937

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -1

Query: 252  GVVESSSPNLSPTATVVVLLGVSGNPIGLDPAKEGR*HSTSVDEVSNITTANTFEII 82
            G   SS+   S  AT    + + GN +GLDP KE   H   +    N T++N+F  +
Sbjct: 2172 GHAHSSNTIYSSCATYYGSIMLPGNQLGLDP-KERVAHIARLAGFHNATSSNSFAFL 2227


>SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
          Length = 1353

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/61 (24%), Positives = 34/61 (55%)
 Frame = +1

Query: 253  KTSDRSERRLRVDR*TEQAAC*QAALLVHQLASLRSAQEEPTNPRAEA*RIHRSHHAQSK 432
            + S +S+ R R D+  + A   QA+  + + + L++  ++   PR ++ +  + HH Q++
Sbjct: 940  QASRKSKARARQDQGKQVARARQASRKI-KTSKLQNQNKQAARPRQKSRKTSKPHHKQAE 998

Query: 433  R 435
            R
Sbjct: 999  R 999


>SB_47841| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)
          Length = 351

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 412 SHHAQSKRCYRPSKLKR 462
           +H A+S+RC+RPS  +R
Sbjct: 52  THQARSRRCFRPSSFRR 68


>SB_2761| Best HMM Match : zf-TRAF (HMM E-Value=0.26)
          Length = 436

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +3

Query: 150 PPSPDQGRLDSRIHLTGPPP*LSETDLAMTTQQR 251
           PP+P Q +L +++ L   P  LS+T +++ T+++
Sbjct: 364 PPAPSQPKLTTQLPLKPSPQPLSQTVISLDTERK 397


>SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30)
          Length = 1280

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
 Frame = +3

Query: 411  IPSCPVKTLLPPKQTQTQCRQYRAAGHRTPHRPVARFKATL-MQL*ETDLILTSPM---- 575
            + + P+++L+PP  T   C    A    T   P+A  ++    ++ +T     +P     
Sbjct: 1084 VDTVPIESLVPPTSTTPICEPVAATPDDTQSVPIATTESRYPTRVRQTPTPAWNPYTDTD 1143

Query: 576  LNQRAPLQTNPARKVRSQLNPTAS 647
            +N+   +Q N AR V +  +P AS
Sbjct: 1144 VNRLEQVQKNAARFVTNTYDPYAS 1167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,180,758
Number of Sequences: 59808
Number of extensions: 429913
Number of successful extensions: 1105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)