Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0075
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.71 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.71 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.9  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 236 DDSTTPRLPIEANGDLELIDRLSKLPVDKQPFWFINWQALEAHRKNPQTHVQRPN 400
           D+S T    I   G + L D++   P+D+ P W  N+     + K+   +  RPN
Sbjct: 628 DESNTKSYEIPLYGKMTLDDKVFGFPLDR-PMWAWNFTIPNMYFKDVFIY-NRPN 680


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 236 DDSTTPRLPIEANGDLELIDRLSKLPVDKQPFWFINWQALEAHRKNPQTHVQRPN 400
           D+S T    I   G + L D++   P+D+ P W  N+     + K+   +  RPN
Sbjct: 628 DESNTKSYEIPLYGKMTLDDKVFGFPLDR-PMWAWNFTIPNMYFKDVFIY-NRPN 680


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 353 LEAHRKNPQTHVQRP 397
           L  H ++PQTHV  P
Sbjct: 325 LNVHFRSPQTHVMAP 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,613
Number of Sequences: 438
Number of extensions: 3553
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)