Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0075
         (717 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01550.1 68417.m00201 no apical meristem (NAM) family protein...    28   7.1  
At3g45750.1 68416.m04944 expressed protein                             27   9.4  

>At4g01550.1 68417.m00201 no apical meristem (NAM) family protein
           similar to  NAC1 (GI:7716952) {Medicago truncatula};
           contains Pfam PF02365 : No apical meristem (NAM) protein
          Length = 457

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 290 IDRLSKLPVDKQPFWFINWQALEAHRKNPQ 379
           ID+ S +   ++  WFI  +A+E +R NP+
Sbjct: 390 IDKESSMVKTEKKSWFITEEAMERNRNNPR 419


>At3g45750.1 68416.m04944 expressed protein
          Length = 682

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 421 HDGIYESVRPLHVGLW 374
           HDG Y    P+HVG W
Sbjct: 630 HDGRYNGEEPMHVGQW 645


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,518,532
Number of Sequences: 28952
Number of extensions: 290993
Number of successful extensions: 710
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)