Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0073
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03450.1 68418.m00300 zinc finger (C3HC4-type RING finger) fa...    31   0.84 
At4g37760.1 68417.m05345 squalene monooxygenase, putative / squa...    29   2.6  
At3g54550.1 68416.m06036 hypothetical protein contains Pfam prof...    28   5.9  
At2g43570.1 68415.m05413 chitinase, putative similar to chitinas...    28   7.8  

>At5g03450.1 68418.m00300 zinc finger (C3HC4-type RING finger)
           family protein 
          Length = 630

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 459 PWTCGLEMNSPVHHIQSCRYRSIVTINRQQRTSGPIRCLFAYTT 328
           PW+C  ++ S  HHI +     +V I   ++T+GP   +   TT
Sbjct: 379 PWSCSWDLKSS-HHIYAGLQNGMVLIFDMRQTTGPFASMTGLTT 421


>At4g37760.1 68417.m05345 squalene monooxygenase, putative /
           squalene epoxidase, putative similar to SP|O65404 (SE
           1,1), SP|O65402 (SE 1,2), SP|O65403 (SE 2)
          Length = 525

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -2

Query: 445 ARDELTSPPYSKLSLSFNCHNKPAATDFWANP--MSLRLHYFRFQIWFLWASPRPRSAVP 272
           AR E+    +  LSL   C + P A     NP  MSL LH+F   I+ +     P  +V 
Sbjct: 416 ARSEMRRACFDYLSLGGVCSSGPVALLSGLNPRPMSLVLHFFAVAIFGVGRLLVPLPSVK 475

Query: 271 QWW 263
           + W
Sbjct: 476 RLW 478


>At3g54550.1 68416.m06036 hypothetical protein contains Pfam profile
           PF04720: Protein of unknown function (DUF506)
          Length = 288

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 612 RTASFVGLDRVDLQYTSNINDRLIVYGFSALICDSLW 722
           +T   V  +  D     N+ D L+  G+ A IC S W
Sbjct: 130 KTTEIVEREVEDKSRLKNVVDELVALGYDAAICKSRW 166


>At2g43570.1 68415.m05413 chitinase, putative similar to chitinase
           class IV GI:722272 from [Brassica napus]
          Length = 277

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 27  KRNDCPGKGFLHVRLCQATANSLSYVG 107
           +R DCPGKGF       A ANS    G
Sbjct: 92  QRGDCPGKGFYTHDTFMAAANSYPSFG 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,875,220
Number of Sequences: 28952
Number of extensions: 268631
Number of successful extensions: 650
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)