Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0072
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024847-5|AAN73850.1|  792|Caenorhabditis elegans Ww domain pro...    28   4.5  
AC024847-4|AAN73849.1|  794|Caenorhabditis elegans Ww domain pro...    28   4.5  
Z81131-2|CAB03425.1|  349|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>AC024847-5|AAN73850.1|  792|Caenorhabditis elegans Ww domain
           protein (e3 ubiquitinligase) protein 1, isoform b
           protein.
          Length = 792

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 354 TCVGRAVCDGARRPTSLLRGSCNSEHNPAALAGSSTNTGLPTSG 223
           T  G A    ARRP +  R +  +  + AA A ++T  G P +G
Sbjct: 173 TSNGVATSSSARRPATAKRDTLAAPTSTAAAAAAATAGGTPAAG 216


>AC024847-4|AAN73849.1|  794|Caenorhabditis elegans Ww domain
           protein (e3 ubiquitinligase) protein 1, isoform a
           protein.
          Length = 794

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 354 TCVGRAVCDGARRPTSLLRGSCNSEHNPAALAGSSTNTGLPTSG 223
           T  G A    ARRP +  R +  +  + AA A ++T  G P +G
Sbjct: 173 TSNGVATSSSARRPATAKRDTLAAPTSTAAAAAAATAGGTPAAG 216


>Z81131-2|CAB03425.1|  349|Caenorhabditis elegans Hypothetical
           protein T24D1.3 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 258 PLTPLGCARCCRTRGAERSADARHRT 335
           P++PLGC  C +  G E   D  +R+
Sbjct: 281 PVSPLGCNNCLQIIGCEECVDIWYRS 306


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,796,268
Number of Sequences: 27780
Number of extensions: 173752
Number of successful extensions: 394
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)