Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0072
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    25   0.46 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.9  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 25.0 bits (52), Expect = 0.46
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -3

Query: 391 KQKAEQRISERVNVCRSCGVRWRASADLSAPRVLQQRAQPSGVSGLL 251
           + K EQ  S+ + VC  C  R+R    L+  + LQ R    G SG+L
Sbjct: 26  QDKHEQ--SDTLYVCEFCNRRYRTKNSLTTHKSLQHR----GSSGML 66


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = +3

Query: 288 CRTRGAERSADARHRTPHDRHTFTRSEIRCSAFCFRLD 401
           CRT G    A     T        R E  C A C   D
Sbjct: 714 CRTSGPRGVAIVSASTARSEQFLCRYEAHCFALCHCCD 751


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 279 HNPAALAGSSTNTGLPTS 226
           + PA+  G S+  G PTS
Sbjct: 887 YKPASTPGCSSKNGEPTS 904


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,276
Number of Sequences: 438
Number of extensions: 2048
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)