Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0072
         (513 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67570.1 68414.m07698 expressed protein                             30   1.1  
At2g17450.1 68415.m02014 zinc finger (C3HC4-type RING finger) fa...    29   1.8  
At1g68670.1 68414.m07846 myb family transcription factor contain...    28   4.2  
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ...    27   5.6  
At2g18090.1 68415.m02103 PHD finger family protein / SWIB comple...    27   5.6  
At1g13740.1 68414.m01613 expressed protein                             27   5.6  
At3g14120.2 68416.m01786 expressed protein similar to Nuclear po...    27   9.8  
At3g14120.1 68416.m01785 expressed protein similar to Nuclear po...    27   9.8  

>At1g67570.1 68414.m07698 expressed protein
          Length = 456

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = -3

Query: 382 AEQRISERVNVCRSCGVRWRASADLSAPRVLQQRAQPSGV 263
           A  +IS R     S   RW A    S+    Q RA PSGV
Sbjct: 319 AATKISHRAQAIASVASRWHAMMSCSSTDSTQIRASPSGV 358


>At2g17450.1 68415.m02014 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 185

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 252 RSPLTPLGCARCCRTRGAERSADARHRTPHDRHTFT 359
           R  LTP+ C RC     AE   D  HR  H +H+ T
Sbjct: 144 RRILTPVRCDRCGHASTAEMK-DQAHRHQHHQHSST 178


>At1g68670.1 68414.m07846 myb family transcription factor contains
           Pfam domain, PF00249: Myb-like DNA-binding domain
          Length = 354

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -1

Query: 324 ARRPTSLLRGSCNSEHNPAALAGSSTNTGLPTS 226
           A+ P   L  SCNS   PAA + ++TNT  P S
Sbjct: 325 AQSPKRSLERSCNS---PAASSSTNTNTSTPVS 354


>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
           protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
          Length = 947

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -1

Query: 468 GRGAWQPAPLPAAVSP*H 415
           G G W P PLPA  SP H
Sbjct: 405 GSGRWIPPPLPATRSPEH 422


>At2g18090.1 68415.m02103 PHD finger family protein / SWIB complex
           BAF60b domain-containing protein / GYF domain-containing
           protein contains Pfam profiles PF02201: BAF60b domain of
           the SWIB complex, PF02213: GYF domain, PF00628:
           PHD-finger
          Length = 824

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -3

Query: 460 RVAAGAAPGRSQSLAFT*LISSLKQKAEQRISERVNVCRSCGVRWRASADLSAPRV 293
           R +AG   G S +        SL   AE++++  V   +SCG  W A+   SA  V
Sbjct: 646 RWSAGQTDGNSAATTACNQNGSLSGSAEKQVTATV---QSCGQNWNAATPSSASNV 698


>At1g13740.1 68414.m01613 expressed protein
          Length = 348

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 294 SCNSEHNPAALAGSSTNTG 238
           SCN E +P  +AG S+N+G
Sbjct: 215 SCNDERSPKIVAGCSSNSG 233


>At3g14120.2 68416.m01786 expressed protein similar to Nuclear pore
           complex protein Nup107 (Nucleoporin Nup107) (107 kDa
           nucleoporin) (p105) (Swiss-Prot:P52590) [Rattus
           norvegicus]
          Length = 1077

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 373 RISERVNVCRSCGVRWRAS 317
           RI E  ++CRS G  WRA+
Sbjct: 331 RIEEACDLCRSAGQSWRAA 349


>At3g14120.1 68416.m01785 expressed protein similar to Nuclear pore
           complex protein Nup107 (Nucleoporin Nup107) (107 kDa
           nucleoporin) (p105) (Swiss-Prot:P52590) [Rattus
           norvegicus]
          Length = 1101

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 373 RISERVNVCRSCGVRWRAS 317
           RI E  ++CRS G  WRA+
Sbjct: 331 RIEEACDLCRSAGQSWRAA 349


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,194,647
Number of Sequences: 28952
Number of extensions: 158351
Number of successful extensions: 397
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)