Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0071
         (686 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006A1716 Cluster: UPI00006A1716 related cluster; n...    34   2.8  
UniRef50_Q5KFW4 Cluster: Topoisomerase 1-associated factor 1; n=...    34   2.8  
UniRef50_Q189V8 Cluster: Putative transcription antiterminator; ...    33   4.9  
UniRef50_A0CR32 Cluster: Chromosome undetermined scaffold_25, wh...    33   6.5  

>UniRef50_UPI00006A1716 Cluster: UPI00006A1716 related cluster; n=1;
           Xenopus tropicalis|Rep: UPI00006A1716 UniRef100 entry -
           Xenopus tropicalis
          Length = 158

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
 Frame = +3

Query: 54  YYVYSILFSTYSVNSMYSNIL*FYIYT*IH--FLHLTYELFFKHSFEE*FMC*VNY--IM 221
           YY+Y++ +  Y+   M   I+ +Y+Y  I+   L + Y L+   ++   F+C   Y  I 
Sbjct: 36  YYLYALSYYLYATIYMRLLIICYYLYVTIYIRLLFICYYLYAATNYMLLFICYYLYATIY 95

Query: 222 YHLIVF*HFLISAVGYILNS*FIFHFCQIMSYPIIFVF-VISSYYI 356
            HL+   ++L +A  Y+     +   C    Y  I++   I  YY+
Sbjct: 96  MHLLFICYYLYAATIYMR----LLFICGYYLYATIYMLPFICGYYL 137


>UniRef50_Q5KFW4 Cluster: Topoisomerase 1-associated factor 1; n=3;
           Filobasidiella neoformans|Rep: Topoisomerase
           1-associated factor 1 - Cryptococcus neoformans
           (Filobasidiella neoformans)
          Length = 1074

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = +3

Query: 39  LQHLRYYVYSILFSTYSVNSMYSNIL*FYIYT*IHFLHLTYELFFKHSFEE*FM 200
           LQH  YY Y IL S  +V   Y N    Y+ + IHF ++   +  K+S  + FM
Sbjct: 512 LQHQLYYNYDILDSALAVVREYKNQSIAYLDSIIHFAYVLLRMLEKYSKTKAFM 565


>UniRef50_Q189V8 Cluster: Putative transcription antiterminator;
           n=3; Clostridium difficile|Rep: Putative transcription
           antiterminator - Clostridium difficile (strain 630)
          Length = 661

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 12/36 (33%), Positives = 25/36 (69%)
 Frame = +1

Query: 445 YVWQSINRNIKYYFELSLIRNI*GYVFDKIVKKLSL 552
           Y+ + + R+++ Y  +S++RN+ GY F+KI K+  +
Sbjct: 211 YITEQVLRDVERYIIMSVLRNLNGYKFEKIDKRFEV 246


>UniRef50_A0CR32 Cluster: Chromosome undetermined scaffold_25, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_25,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 3170

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 17/34 (50%), Positives = 22/34 (64%)
 Frame = +2

Query: 488 NYH*SETSKDTFLTKLSRN*VCISIGRRGQTNIW 589
           NY+ SE  K  +LTKL+    C SI ++GQT IW
Sbjct: 633 NYYDSEECKSIYLTKLA----CSSITKKGQTCIW 662


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 545,761,876
Number of Sequences: 1657284
Number of extensions: 9909579
Number of successful extensions: 17720
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17690
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)