Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0071
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   3.4  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   4.4  
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    26   5.9  
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...    26   5.9  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    25   7.8  

>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 188 RIVHVLSKLYYVPFNCFLTFSH*CGWVYFKLIIHISFLS 304
           R+  +LSKLY VPFN  L F    G    + +IH   L+
Sbjct: 608 RLRGLLSKLYVVPFNRNLLFKRLMG---IRFVIHYRSLA 643


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 252 ISAVGYILNS*FIFHFCQIMSYPIIFVFVISSYYICTYCI 371
           IS  G  LN+ +    C++ SY   F+ V++S ++ + CI
Sbjct: 133 ISGTGPSLNASYK-SLCKLYSYENSFIVVLNSIFVVSSCI 171


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 64  IVFYLVHIR*IQCIVIFFNFIYILKFISCI*HMNYSSNIHLKN 192
           IVF LV I  +     +  F  IL  +SC+ +   + N  LKN
Sbjct: 40  IVFPLVSIFSLPQKQTYHRFFSILSLVSCLAYFTMACNYGLKN 82


>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 589 GGEHHSIADLISNTM*ISPSDIA 657
           GG H  +  LISN + I+P D++
Sbjct: 9   GGSHPELLHLISNRLGITPCDVS 31


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 535 QFCQKRILRCFGSMIVQNSILY 470
           + C+++ LRC G +  QN ++Y
Sbjct: 9   ELCRRKKLRCNGELTCQNCMVY 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,461,941
Number of Sequences: 5004
Number of extensions: 47685
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)