Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0071
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39597| Best HMM Match : 7tm_2 (HMM E-Value=2.9e-13)                 29   3.5  
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  

>SB_39597| Best HMM Match : 7tm_2 (HMM E-Value=2.9e-13)
          Length = 1052

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -2

Query: 595 PHPDVSLSPPTNTNADLIS*QFCQKRILRC 506
           PHPD     PTN N D     FC K    C
Sbjct: 178 PHPDEPPPSPTNNNEDAPQKLFCTKDATSC 207


>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
 Frame = +3

Query: 66  SILFSTYS---VNSMYSNIL*FYIYT*IHFLHLTYELFFKHSFEE*FMC*VNYIMYHLIV 236
           S+LF   S   VN +Y  I  F++    H +++ + ++  H      +C VNY MYH+I 
Sbjct: 85  SLLFHVSSLCHVNYVYHVIWLFHVSLLCHVIYMYHVIWLFHVS---LLCHVNY-MYHVIW 140

Query: 237 F*HF-LISAVGYILNS*FIFH 296
             H   +  V Y+ +  ++FH
Sbjct: 141 LFHVSWLCHVNYMYHVIWLFH 161


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,715,594
Number of Sequences: 59808
Number of extensions: 297577
Number of successful extensions: 424
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)