Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0070
(638 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2) ... 246 7e-66
At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1) 246 1e-65
At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1) (... 140 9e-34
At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1) (... 135 3e-32
At1g79210.1 68414.m09235 20S proteasome alpha subunit B, putativ... 134 5e-32
At3g14290.1 68416.m01808 20S proteasome alpha subunit E2 (PAE2) ... 134 6e-32
At1g53850.1 68414.m06129 20S proteasome alpha subunit E1 (PAE1) ... 134 6e-32
At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1) ... 124 7e-29
At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2) ... 124 7e-29
At5g35590.1 68418.m04237 20S proteasome alpha subunit A1 (PAA1) ... 106 1e-23
At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1) (... 104 4e-23
At2g05840.1 68415.m00632 20S proteasome alpha subunit A2 (PAA2) ... 100 7e-22
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 40 0.001
At3g26340.1 68416.m03286 20S proteasome beta subunit E, putative... 33 0.21
At1g13060.1 68414.m01514 20S proteasome beta subunit E1 (PBE1) (... 33 0.21
At2g30500.1 68415.m03715 kinase interacting family protein simil... 29 2.0
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 25 2.3
At4g12020.1 68417.m01912 protein kinase family protein similar t... 29 3.4
At3g52080.1 68416.m05715 cation/hydrogen exchanger, putative (CH... 28 4.5
At5g15280.1 68418.m01790 pentatricopeptide (PPR) repeat-containi... 28 6.0
At2g28260.1 68415.m03430 cyclic nucleotide-regulated ion channel... 27 7.9
>At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2)
(PRS1) (PRC6) identical to SP|O24616 Proteasome subunit
alpha type 7-2 (EC 3.4.25.1) (20S proteasome alpha
subunit D2) {Arabidopsis thaliana}
Length = 250
Score = 246 bits (603), Expect = 7e-66
Identities = 118/177 (66%), Positives = 139/177 (78%), Gaps = 1/177 (0%)
Frame = +2
Query: 86 ARYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVR 265
ARYDRAITVFSPDGHL QVEYA EAVRKG+ A EKKS KLQ+ R+ R
Sbjct: 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKLQDSRSAR 61
Query: 266 KICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQ 445
KI LD+H+ +A AGL ADAR+LIN+A+IECQSH+LT+EDPVT+EYITRYIAGL+QKYTQ
Sbjct: 62 KIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQ 121
Query: 446 SNGRRPFGISCLIGGFD-YDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNY 613
S G RPFG+S LI GFD Y P L+QT+PSG + WKANATGR++ ++REFLEKNY
Sbjct: 122 SGGVRPFGLSTLIVGFDPYSRLPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNY 178
>At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1)
Length = 250
Score = 246 bits (601), Expect = 1e-65
Identities = 118/177 (66%), Positives = 139/177 (78%), Gaps = 1/177 (0%)
Frame = +2
Query: 86 ARYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVR 265
ARYDRAITVFSPDGHL QVEYA EAVRKG+ A EKKS KLQ+ R+ R
Sbjct: 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKLQDSRSAR 61
Query: 266 KICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQ 445
KI LD+H+ +A AGL ADAR+LIN+A+IECQSH+LT+EDPVT+EYITRYIAGL+QKYTQ
Sbjct: 62 KIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQ 121
Query: 446 SNGRRPFGISCLIGGFD-YDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNY 613
S G RPFG+S LI GFD Y P L+QT+PSG + WKANATGR++ ++REFLEKNY
Sbjct: 122 SGGVRPFGLSTLIVGFDPYTRIPALYQTDPSGTFSAWKANATGRNSNSIREFLEKNY 178
>At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1)
(PRC9) identical to GB:AAC32057 from [Arabidopsis
thaliana] (Genetics (1998) 149 (2), 677-692); identical
to cDNA proteasome subunit prc9 GI:2511583
Length = 250
Score = 140 bits (338), Expect = 9e-34
Identities = 71/187 (37%), Positives = 103/187 (55%), Gaps = 1/187 (0%)
Frame = +2
Query: 80 MSARYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKL-QEER 256
MS RYD T+FSP+G L QVEYA EA+ +A EKK +KL Q
Sbjct: 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLIGEKKVTSKLLQTST 60
Query: 257 TVRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQK 436
+ K+ +DDHV A AG+ +DA ILIN A+++ Q + ++P+ +E + + + KQ
Sbjct: 61 SAEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFMYQEPMPVEQLVQSLCDTKQG 120
Query: 437 YTQSNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYT 616
YTQ G RPFG+S L G+D L+ ++PSG Y WKA A G + + + L+++Y
Sbjct: 121 YTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYGGWKAAAVGANNQAAQSILKQDYK 180
Query: 617 ADEVATE 637
D E
Sbjct: 181 DDATREE 187
>At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1)
(PRC3) identical to proteasome subunit alpha type 2
SP:O23708, GI:6093778; identical to cDNA proteasome
subunit prc3 GI:2511573
Length = 235
Score = 135 bits (326), Expect = 3e-32
Identities = 63/179 (35%), Positives = 107/179 (59%)
Frame = +2
Query: 86 ARYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVR 265
++Y ++T FSP G L+Q+E+A AV G T+ EKK + L +E +V+
Sbjct: 4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASVQ 63
Query: 266 KICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQ 445
KI L ++ + ++G+ D R+L+ +++ + + + ++P+ + + R A + Q++TQ
Sbjct: 64 KIQHLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQ 123
Query: 446 SNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTAD 622
S G RPFG+S L+ G+D D P L+Q +PSG Y+ WKA+A G++ + FLEK YT D
Sbjct: 124 SGGVRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTED 181
>At1g79210.1 68414.m09235 20S proteasome alpha subunit B, putative
nearly identical to SP|O23708 Proteasome subunit alpha
type 2 (EC 3.4.25.1) (20S proteasome alpha subunit B)
{Arabidopsis thaliana} and to At1g16470
Length = 235
Score = 134 bits (324), Expect = 5e-32
Identities = 63/179 (35%), Positives = 106/179 (59%)
Frame = +2
Query: 86 ARYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVR 265
++Y ++T FSP G L+Q+E+A AV G T+ EKK + L +E +V+
Sbjct: 4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASVQ 63
Query: 266 KICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQ 445
KI L ++ ++G+ D R+L+ +++ + + + ++P+ + + R A + Q++TQ
Sbjct: 64 KIQHLTPNIGTVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQ 123
Query: 446 SNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTAD 622
S G RPFG+S L+ G+D D P L+Q +PSG Y+ WKA+A G++ + FLEK YT D
Sbjct: 124 SGGVRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTED 181
>At3g14290.1 68416.m01808 20S proteasome alpha subunit E2 (PAE2)
identical to 20S proteasome subunit PAE2 GB:AAC32061
from [Arabidopsis thaliana]
Length = 237
Score = 134 bits (323), Expect = 6e-32
Identities = 70/187 (37%), Positives = 108/187 (57%), Gaps = 3/187 (1%)
Frame = +2
Query: 71 FLTMSARYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQE 250
FLT + YDR + FSP+G L QVEYA EA++ GSTA EK+ + L E
Sbjct: 2 FLTRT-EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLE 60
Query: 251 ERTVRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLK 430
+V KI +DDH+ A +GL ADAR L+ A++E Q+H+ + +P+T+E T+ + L
Sbjct: 61 PSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLA 120
Query: 431 QKY---TQSNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFL 601
++ + + RPFG+S LI G D +G P L+ T+PSG +++ A A G ++ L
Sbjct: 121 LRFGEGEEESMSRPFGVSLLIAGHDENG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSL 179
Query: 602 EKNYTAD 622
++ + D
Sbjct: 180 QEQFNKD 186
>At1g53850.1 68414.m06129 20S proteasome alpha subunit E1 (PAE1)
identical to 20S proteasome subunit PAE1 GI:3421087 from
[Arabidopsis thaliana]
Length = 237
Score = 134 bits (323), Expect = 6e-32
Identities = 70/187 (37%), Positives = 108/187 (57%), Gaps = 3/187 (1%)
Frame = +2
Query: 71 FLTMSARYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQE 250
FLT + YDR + FSP+G L QVEYA EA++ GSTA EK+ + L E
Sbjct: 2 FLTRT-EYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLE 60
Query: 251 ERTVRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLK 430
+V KI +DDH+ A +GL ADAR L+ A++E Q+H+ + +P+T+E T+ + L
Sbjct: 61 PSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLA 120
Query: 431 QKY---TQSNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFL 601
++ + + RPFG+S LI G D +G P L+ T+PSG +++ A A G ++ L
Sbjct: 121 LRFGEGEEESMSRPFGVSLLIAGHDENG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSL 179
Query: 602 EKNYTAD 622
++ + D
Sbjct: 180 QEQFNKD 186
>At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1)
(gb|AAC32062.1)
Length = 278
Score = 124 bits (298), Expect = 7e-29
Identities = 64/175 (36%), Positives = 100/175 (57%)
Frame = +2
Query: 89 RYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRK 268
+YD +T +SP G L QVEYA EAV++GS A K+ ++L + RK
Sbjct: 5 QYDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSELSSHQ--RK 62
Query: 269 ICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQS 448
I +DDH+ +A AGLTAD R+L + E +H T E P+ + + ++A Q TQ
Sbjct: 63 IFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQR 122
Query: 449 NGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNY 613
+ +RP+G+ L+GG D G+ HL+ PSG Y+E++A A G ++ + +LE+ +
Sbjct: 123 SWKRPYGVGLLVGGLDESGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF 176
>At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2)
(PRC2B) (PRS1) identical to GB:AAC32063 from
[Arabidopsis thaliana] (Genetics 149 (2), 677-692
(1998)); identical to cDNA proteasome subunit prc2b
GI:2511585
Length = 277
Score = 124 bits (298), Expect = 7e-29
Identities = 64/175 (36%), Positives = 100/175 (57%)
Frame = +2
Query: 89 RYDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRK 268
+YD +T +SP G L QVEYA EAV++GS A K+ ++L + RK
Sbjct: 5 QYDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSELSSHQ--RK 62
Query: 269 ICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQS 448
I +DDH+ +A AGLTAD R+L + E +H T E P+ + + ++A Q TQ
Sbjct: 63 IFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQR 122
Query: 449 NGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNY 613
+ +RP+G+ L+GG D G+ HL+ PSG Y+E++A A G ++ + +LE+ +
Sbjct: 123 SWKRPYGVGLLVGGLDESGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERKF 176
>At5g35590.1 68418.m04237 20S proteasome alpha subunit A1 (PAA1)
(PRC1) identical to proteasome subunit alpha type 6-1
SP:O81146 GI:12643647 from [Arabidopsis thaliana];
identical to cDNA proteasome subunit prc1 GI:2511587
Length = 246
Score = 106 bits (254), Expect = 1e-23
Identities = 57/175 (32%), Positives = 94/175 (53%), Gaps = 1/175 (0%)
Frame = +2
Query: 86 ARYDRAITVFSPDGHLLQVEYAQEAVRK-GSTAXXXXXXXXXXXXXEKKSVAKLQEERTV 262
A YDR IT+FSP+G L QVEYA +AV+ G T+ +KK KL ++ +V
Sbjct: 7 AGYDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSV 66
Query: 263 RKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYT 442
+ + ++ + G+TADAR L+ +A+ + + T + ++ + ++IA Q YT
Sbjct: 67 THLFPITKYIGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVYT 126
Query: 443 QSNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEK 607
Q RP G+ ++ G D + P L++ +P+G +Y KA + G + FLEK
Sbjct: 127 QHAYMRPLGVVAMVMGVDEENGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEK 181
>At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1)
(PRC8) identical to proteasome subunit alpha type 3
SP:O23715, GI:12644056 from [Arabidopsis thaliana];
identical to cDNA proteasome subunit prc8 GI:2511591
Length = 249
Score = 104 bits (250), Expect = 4e-23
Identities = 58/172 (33%), Positives = 88/172 (51%)
Frame = +2
Query: 92 YDRAITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRKI 271
YD ++T FSPDG + Q+EYA +AV T EK +K+ + R+I
Sbjct: 8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVVGIKCKDGIVMGVEKLIASKMMLPGSNRRI 67
Query: 272 CLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSN 451
+ H MA AGL AD R ++ RA+ E +S++ D V ++ ++ +A T
Sbjct: 68 HSVHRHAGMAVAGLAADGRQIVARAKSEARSYESVYGDAVPVKELSERVASYVHLCTLYW 127
Query: 452 GRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEK 607
RPFG ++GG+D DG P L+ EPSGI Y + A G+ + + +EK
Sbjct: 128 WLRPFGCGVILGGYDRDG-PQLYMIEPSGISYRYFGAAIGKGKQAAKTEIEK 178
>At2g05840.1 68415.m00632 20S proteasome alpha subunit A2 (PAA2)
identical to GB:AF043519
Length = 246
Score = 100 bits (240), Expect = 7e-22
Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 1/175 (0%)
Frame = +2
Query: 86 ARYDRAITVFSPDGHLLQVEYAQEAVRK-GSTAXXXXXXXXXXXXXEKKSVAKLQEERTV 262
A YDR IT+FSP+G L QVEYA +AV+ G T+ +KK KL ++ +V
Sbjct: 7 AGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSV 66
Query: 263 RKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYT 442
+ + ++ + G+TAD+R L+ +A+ E + + + + ++IA Q YT
Sbjct: 67 SHLFPVTKYLGLLATGMTADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVYT 126
Query: 443 QSNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEK 607
Q RP G+ ++ G D + P L++ +P+G +Y KA + G + FLEK
Sbjct: 127 QHAYMRPLGVVAMVLGIDEERGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEK 181
>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 428
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = +2
Query: 470 ISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATE 637
++C + G+D + L+ ++PSG Y W+A A G + + + L+++Y D E
Sbjct: 354 VACAVAGWDRNHGFQLYMSDPSGNYGGWQAAAVGANNQAAQSILKQDYKDDATREE 409
>At3g26340.1 68416.m03286 20S proteasome beta subunit E, putative
very strong similarity to SP|O23717 Proteasome subunit
beta type 5 precursor (EC 3.4.25.1) (20S proteasome
subunit E) (Proteasome epsilon chain) {Arabidopsis
thaliana}
Length = 273
Score = 32.7 bits (71), Expect = 0.21
Identities = 24/123 (19%), Positives = 53/123 (43%)
Frame = +2
Query: 254 RTVRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQ 433
++V+KI ++ +++ AG AD + I+C+ H+L + +++ ++ +A +
Sbjct: 86 QSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLY 145
Query: 434 KYTQSNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNY 613
Y + +I G+D G P L+ + G + + G + L+ Y
Sbjct: 146 SYRGMG----LSVGTMIAGWDETG-PGLYYVDNEGGRLKGDRFSVGSGSPYAYGVLDSGY 200
Query: 614 TAD 622
D
Sbjct: 201 KFD 203
>At1g13060.1 68414.m01514 20S proteasome beta subunit E1 (PBE1)
(PRCE) identical to GB:O23717; identical to cDNA
proteasome subunit prce GI:2511595
Length = 274
Score = 32.7 bits (71), Expect = 0.21
Identities = 24/123 (19%), Positives = 53/123 (43%)
Frame = +2
Query: 254 RTVRKICLLDDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQ 433
++V+KI ++ +++ AG AD + I+C+ H+L + +++ ++ +A +
Sbjct: 86 QSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLY 145
Query: 434 KYTQSNGRRPFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNY 613
Y + +I G+D G P L+ + G + + G + L+ Y
Sbjct: 146 SYRGMG----LSVGTMIAGWDETG-PGLYYVDNEGGRLKGDRFSVGSGSPYAYGVLDSGY 200
Query: 614 TAD 622
D
Sbjct: 201 KYD 203
>At2g30500.1 68415.m03715 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 517
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +2
Query: 221 EKKSVAKLQEERTVRKICLLD-DHVVMAFAGLTADA--RILINRAQIECQSHKLTVE 382
EKK V KLQE + K L D D+ + A +DA +I +AQI+ + K+ E
Sbjct: 324 EKKEVLKLQERLAMVKTSLQDRDNEIRALKTAVSDAEQKIFPEKAQIKGEMSKMLEE 380
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 25.0 bits (52), Expect(2) = 2.3
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Frame = +2
Query: 224 KKSVAKLQEERTVRKICLLDDHVVMAFAGLT-----ADARILINRAQIEC-QSHKLTVED 385
++S+ K+ + +++ L DD + + A +T AD L+N A + + K+TV+
Sbjct: 505 RESILKVHVSK--KELPLGDDVNLASIASMTTGFTGADLANLVNEAALLAGRKSKMTVDK 562
Query: 386 PVTLEYITRYIAGLKQKYTQSNG 454
+ + R IAG+++K + G
Sbjct: 563 IDFIHAVERSIAGIEKKTARLKG 585
Score = 22.6 bits (46), Expect(2) = 2.3
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 74 LTMSARYDRAITVFSPD 124
L R+DR +TV SPD
Sbjct: 485 LRRPGRFDRVVTVESPD 501
>At4g12020.1 68417.m01912 protein kinase family protein similar to
mitogen-activated protein kinase [Arabidopsis thaliana]
GI:1255448; contains Pfam profiles PF02671: Paired
amphipathic helix repeat, PF03106: WRKY DNA-binding
domain, PF00560: Leucine Rich Repeat, PF00069: Protein
kinase domain, PF00931: NB-ARC domain
Length = 1798
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 554 SIHNIYQKVQFGTSVVNHHSRILLSNTKY 468
S+ +YQ+ Q G SVV+ ++R +L KY
Sbjct: 1711 SLRKLYQRNQLGDSVVSLYTRQILDGLKY 1739
>At3g52080.1 68416.m05715 cation/hydrogen exchanger, putative
(CHX28) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 732
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 332 LINRAQIECQSHKLTVEDPVTLEYITRYIAG 424
++NRA + Q ++ ++D E+ RYIAG
Sbjct: 605 ILNRASVVDQEEEMKLDDECFAEFYERYIAG 635
>At5g15280.1 68418.m01790 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1227
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 289 RRNGICRIDSRRSYINKPCTNRMSITQVN 375
R+N IC + S R Y+ K C S++ ++
Sbjct: 866 RKNIICSVKSYREYVRKMCLEPQSLSAIS 894
>At2g28260.1 68415.m03430 cyclic nucleotide-regulated ion channel,
putative (CNGC15) similar to cyclic nucleotide and
calmodulin-regulated ion channel (cngc6) GI:4581207 from
[Arabidopsis thaliana]
Length = 678
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 416 IAGLKQKYTQSNGRRPFGISCLIGGFDYDG 505
I G YT + GR F SCLIG D+ G
Sbjct: 512 IRGHLDSYTTNGGRTGFFNSCLIGPGDFCG 541
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,109,177
Number of Sequences: 28952
Number of extensions: 268811
Number of successful extensions: 671
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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