Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0066
         (537 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    26   3.1  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   5.4  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    25   7.2  

>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 173 FFYFNKRLFETEASLSFKYEKKHGGSMKESRKPTRAN 283
           FF F K    +  S SFK E  +    K S KP +++
Sbjct: 291 FFTFTKTEESSPYSFSFKLEDSNTPKFKSSSKPVKSS 327


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 173 FFYFNKRLFETEASLSFKYEKKHGGSMKESRKPTRAN 283
           F  F  +  E   SL   ++KK+   +KE++ PTR++
Sbjct: 444 FDSFVNKFSELNDSLDQFFKKKYEEEIKETKSPTRSS 480


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 379 LRDVRLKSQLPDYTQPVQLYKFKFIDRSNLFLLLALIPHFVGSS 510
           +R  RL S+ P+  QP++    +F+ RS    +  ++P   G +
Sbjct: 313 IRMYRLMSRTPNGLQPLRQTFEEFVKRSGFAAVAKIVPQVGGEA 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,725,591
Number of Sequences: 5004
Number of extensions: 26546
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)