Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0065
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    26   4.0  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   9.1  

>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +3

Query: 438 WRWLNYCCSRLI----NRTALIFSHPRFSLVLCGNE-GYVRVYILRIWYKLVK 581
           W +    C R++    N  +  F H +F +++ G+E G V+++   + Y L+K
Sbjct: 213 WDYQTKACVRILEGHTNNVSFAFFHSKFPIIISGSEDGTVKIW-HTLSYSLIK 264


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 12  PLQNVGLIRNLVYLLR--TDDNAILKNRKKILK 104
           PLQ V L+RNLV   +   D  AI+  +K ++K
Sbjct: 814 PLQEVSLVRNLVKTAQQWLDKFAIIFKKKSMVK 846


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,843,047
Number of Sequences: 5004
Number of extensions: 26814
Number of successful extensions: 74
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)