Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0063
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50107| Best HMM Match : SpoVT_AbrB (HMM E-Value=6.1)                30   1.2  
SB_35370| Best HMM Match : Ank (HMM E-Value=4.8e-06)                   30   1.6  
SB_4786| Best HMM Match : VWA (HMM E-Value=3.5e-28)                    29   3.8  
SB_7674| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  
SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_58743| Best HMM Match : PPTA (HMM E-Value=7.6)                      27   8.7  

>SB_50107| Best HMM Match : SpoVT_AbrB (HMM E-Value=6.1)
          Length = 677

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 254 YFNETNPECYLFQTHPSFCCLKIS 183
           Y   T   C+L+QT   FCCL+++
Sbjct: 256 YIGRTPMRCHLYQTPKPFCCLRLN 279


>SB_35370| Best HMM Match : Ank (HMM E-Value=4.8e-06)
          Length = 813

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 399 KSITRSNVTRA-NSTAAFPRGRRPQRVL*KIDVHCV 295
           KS+   NV  + N+T+AFP G RP+++     + CV
Sbjct: 140 KSLGGENVNESSNNTSAFPSGIRPKQISTTFPIRCV 175


>SB_4786| Best HMM Match : VWA (HMM E-Value=3.5e-28)
          Length = 444

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -3

Query: 371 VLIQPLRSPEVVDPSASYKR*MYIACDTKQAHQLSFFDV 255
           +L +PLRS ++ D SA + +   I  D K AH+ +  DV
Sbjct: 182 LLEEPLRSVKIRDVSALFMQYSSIPIDVKDAHRRNDLDV 220


>SB_7674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 263 FDVYFNETNPECYLFQTHPSFC 198
           F +Y ++ NP+C  F  HP+ C
Sbjct: 31  FQLYISKLNPKCETFFQHPTKC 52


>SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1535

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 480 KDCADTCVSSSIT*SENIVQTNNNRFSKSITRS 382
           KD AD  + +S    +NI +TNNN+ ++S + S
Sbjct: 715 KDVADNLIVNSRKRKKNIKKTNNNKNTRSSSSS 747


>SB_58743| Best HMM Match : PPTA (HMM E-Value=7.6)
          Length = 167

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = -3

Query: 320 YKR*MYIACDTKQAHQLSFFDVYFNETNPE--CYLFQTHPSFCCLKISGH-CVAC 165
           YK    I CD  + H     D  + ET+P   C   +THP+  C  +  H  + C
Sbjct: 4   YKTRPAIVCDYMETHPAIVCD--YMETHPAIVCDYMETHPAIVCDYMETHPAIVC 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,767,301
Number of Sequences: 59808
Number of extensions: 377788
Number of successful extensions: 845
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)