Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0063
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12370.1 68417.m01955 hypothetical protein                          29   1.8  
At1g73020.1 68414.m08444 expressed protein contains Pfam profile...    28   5.4  

>At4g12370.1 68417.m01955 hypothetical protein
          Length = 300

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = -3

Query: 374 HVLIQPLRSPEVVDPSASYKR*MYIACDTKQAHQLSFFDVYFNE--TNPECYLFQTHPSF 201
           H  +  L  PE+   +  Y R  ++      + ++ FF+ +  E    P+C L     +F
Sbjct: 17  HQKMYTLNLPELAKSTVCYSRDGWLLMRKTISREMFFFNPFTRELINVPKCTLSYDAIAF 76

Query: 200 CCLKISGHCV 171
            C   SG CV
Sbjct: 77  SCAPTSGTCV 86


>At1g73020.1 68414.m08444 expressed protein contains Pfam profile
           PF04547: Protein of unknown function, DUF590; expression
           supported by MPSS
          Length = 558

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -3

Query: 206 SFC-CLKISGHCVACT*AYPLRCRNARTNSQNYL--YKSLFLMFACMYVL 66
           SFC CLK  G+       +PLRC+  R +  N +  Y +   +F  + +L
Sbjct: 84  SFCVCLKFDGYLSLQELIFPLRCKGLRLSFGNLMGYYSAGLNVFGAINIL 133


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,067,172
Number of Sequences: 28952
Number of extensions: 244866
Number of successful extensions: 496
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)