Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0061
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   6.5  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    26   6.5  

>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 18/74 (24%), Positives = 39/74 (52%)
 Frame = +3

Query: 57  LENVEREYAHSSK*DWYLLKSICLNTK*YA*IDGTRCLFLNYI*FMATNMYVVSESENYR 236
           +E+    Y+ SSK  ++  K I + ++  + +D +   F NY+  +A  ++ +SE     
Sbjct: 426 IEDCNEAYSLSSK--FHFKKEILIASQLSSHLDYST--FKNYLMPLAITLHFISEELRLD 481

Query: 237 NLINYRFDQIIVFL 278
           +++  R DQ++  L
Sbjct: 482 SVVKPRKDQLVALL 495


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 589 FLELHCRDQYFFKLKIFFSRYNNIGSK 509
           +  L  RD+YF KLK+F   Y+NI  K
Sbjct: 259 YANLEERDKYFSKLKMFI-EYSNIVHK 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,737,561
Number of Sequences: 5004
Number of extensions: 51215
Number of successful extensions: 133
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)