Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0061
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   2.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   4.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   4.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.2  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -3

Query: 156 HRFTRITLYLNKSI 115
           H+F+ +TLY NK++
Sbjct: 91  HKFSSVTLYRNKTV 104


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 679 HVSINFDSIIYSYKLFFLFYETIVF 605
           H ++    ++YS K F +FY T V+
Sbjct: 104 HQAVVLFRLLYSAKTFDVFYNTAVW 128


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 679 HVSINFDSIIYSYKLFFLFYETIVF 605
           H ++    ++YS K F +FY T V+
Sbjct: 104 HQAVVLFRLLYSAKTFDVFYNTAVW 128


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 68  DIF*F*TLRSETCFGTFNAIV 6
           DIF   TLR +T F T N IV
Sbjct: 224 DIFFNITLRRKTLFYTVNLIV 244


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,854
Number of Sequences: 438
Number of extensions: 4088
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)