Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0060
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0470 - 17551368-17552330,17552420-17552920                       28   8.8  
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623...    28   8.8  

>08_02_0470 - 17551368-17552330,17552420-17552920
          Length = 487

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -1

Query: 304 YRMRVI*KLCQTI*KVKAGIHSYALYIPLFNLCSII--TTELHRL 176
           YR  +  +L   I  V+A I SY L++PL +   II    ++HR+
Sbjct: 96  YRFVMAGRLADKIRSVQARIDSYLLFLPLISHIDIIHCLDQIHRM 140


>04_04_1593 -
           34661670-34661798,34661882-34661989,34662129-34662368,
           34662614-34662782,34662872-34663362,34663681-34663991,
           34664396-34664473,34665034-34665228,34665363-34665524,
           34665759-34665840
          Length = 654

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/72 (25%), Positives = 36/72 (50%)
 Frame = -3

Query: 428 LLSCLKLRTSEPSRSTLGALSRDISNTSSNAMEFRTEREIDIQNESYLKIVSNYLESQSG 249
           +LS L+ +T + S+     + R +++  +  +E + E+E+ ++  S LK +        G
Sbjct: 584 ILSLLEQKTGKASKK----IPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLRSQG 639

Query: 248 NTFICLIYSFVQ 213
           NT    I S V+
Sbjct: 640 NTIAVGIVSRVR 651


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,831,175
Number of Sequences: 37544
Number of extensions: 270871
Number of successful extensions: 404
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)