Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0060
(733 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 23 3.0
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 5.2
DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex det... 22 6.8
DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex det... 22 6.8
DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex det... 22 6.8
DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex det... 22 6.8
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 22 6.8
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 22 6.8
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 22 6.8
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 22 6.8
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 21 9.0
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 21 9.0
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 23.0 bits (47), Expect = 3.0
Identities = 13/50 (26%), Positives = 21/50 (42%)
Frame = -3
Query: 365 RDISNTSSNAMEFRTEREIDIQNESYLKIVSNYLESQSGNTFICLIYSFV 216
R TS RTERE + + + +NY + N + L Y+ +
Sbjct: 290 RKYGETSKERSRNRTEREKSKEPKIISSLSNNYNYNNYNNNYKPLYYNII 339
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 22.2 bits (45), Expect = 5.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 183 CSSVVMIEHKLNKGIYKAYECI 248
CSS+V + +NK +YK + I
Sbjct: 928 CSSLVDVSTPVNKKVYKQNDYI 949
>DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.8 bits (44), Expect = 6.8
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = -3
Query: 365 RDISNTSSNAMEFRTEREIDIQNESYLKIVSNYLESQSGNTFICLIYS 222
R TS RTERE + + + +NY + N + L Y+
Sbjct: 57 RKYGETSKERSRNRTEREKSKEPKIISSLSNNYNYNNYNNNYKPLYYN 104
>DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.8 bits (44), Expect = 6.8
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = -3
Query: 365 RDISNTSSNAMEFRTEREIDIQNESYLKIVSNYLESQSGNTFICLIYS 222
R TS RTERE + + + +NY + N + L Y+
Sbjct: 57 RKYGETSKERSRNRTEREKSKEPKIISSLSNNYNYNNYNNNYKPLYYN 104
>DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.8 bits (44), Expect = 6.8
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = -3
Query: 365 RDISNTSSNAMEFRTEREIDIQNESYLKIVSNYLESQSGNTFICLIYS 222
R TS RTERE + + + +NY + N + L Y+
Sbjct: 57 RKYGETSKERSRNRTEREKSKEPKIISSLSNNYNYNNYNNNYKPLYYN 104
>DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.8 bits (44), Expect = 6.8
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = -3
Query: 365 RDISNTSSNAMEFRTEREIDIQNESYLKIVSNYLESQSGNTFICLIYS 222
R TS RTERE + + + +NY + N + L Y+
Sbjct: 57 RKYGETSKERSRNRTEREKSKEPKIISSLSNNYNYNNYNNNYKPLYYN 104
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 6.8
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = -3
Query: 365 RDISNTSSNAMEFRTEREIDIQNESYLKIVSNYLESQSGNTFICLIYS 222
R TS RTERE + + + +NY + N + L Y+
Sbjct: 290 RKYGETSKERSRNRTEREKSKEPKIISSLSNNYNYNNYNNNYKPLYYN 337
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 6.8
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = -3
Query: 365 RDISNTSSNAMEFRTEREIDIQNESYLKIVSNYLESQSGNTFICLIYS 222
R TS RTERE + + + +NY + N + L Y+
Sbjct: 290 RKYGETSKERSRNRTEREKSKEPKIISSLSNNYNYNNYNNNYKPLYYN 337
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 6.8
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = -3
Query: 365 RDISNTSSNAMEFRTEREIDIQNESYLKIVSNYLESQSGNTFICLIYS 222
R TS RTERE + + + +NY + N + L Y+
Sbjct: 290 RKYGETSKERSRNRTEREKSKEPKIISSLSNNYNYNNYNNNYKPLYYN 337
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.8 bits (44), Expect = 6.8
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = -3
Query: 365 RDISNTSSNAMEFRTEREIDIQNESYLKIVSNYLESQSGNTFICLIYS 222
R TS RTERE + + + +NY + N + L Y+
Sbjct: 279 RKYGETSKERSRNRTEREKSKEPKIISSLSNNYNYNNYNNNYKPLYYN 326
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.4 bits (43), Expect = 9.0
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = -3
Query: 365 RDISNTSSNAMEFRTEREIDIQNESYLKIVSNYLESQSGN 246
R TS + RTERE + + + +NY S N
Sbjct: 57 RKYRETSKERSQDRTERETSKEPKIISSLSNNYKYSNYNN 96
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.4 bits (43), Expect = 9.0
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = -3
Query: 365 RDISNTSSNAMEFRTEREIDIQNESYLKIVSNYLESQSGN 246
R TS + RTERE + + + +NY S N
Sbjct: 57 RKYRETSKERSQDRTERETSKEPKIISSLSNNYKYSNYNN 96
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,477
Number of Sequences: 438
Number of extensions: 3604
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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