Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0057
         (735 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    25   0.63 
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    24   1.5  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   4.5  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   7.8  

>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +1

Query: 313 PRHLLVMKGAPERILERCSTIFIGGKEKVLDEEMKEAFNNA 435
           P+H+L+ KG PE +  +   +     +  +D+  +   N+A
Sbjct: 583 PQHMLIPKGTPEGMKSQLFVMISNYDDDKIDQSTEGVCNDA 623


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 725 LPSEIIPTDLAIALAVMGWSPVTMITLIP 639
           +P+ +   D+A+ L   G SP+ ++  IP
Sbjct: 175 VPTRLANGDIALVLPTQGASPLPLLVPIP 203


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = -2

Query: 218 DKTSPRASSMHFSKAASEASPATSFFRIGTPS*PPLNSARLQSEAILARALKPGLVRSY 42
           +K++ R ++      AS+ASPA +   + TP+  P  S       +  +   P + +SY
Sbjct: 191 NKSASRTTTSPTKVKASKASPAAAPRSVATPTGIPTPSTSASPPTVNIKKESPQM-QSY 248


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 247 EIPFNSTNKYQVSIHESDDPSDPRHLL 327
           +I  NS +KY+ ++H     ++PR ++
Sbjct: 143 QIMLNSLHKYKPTVHLVRVGTEPRRVI 169


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.136    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,999
Number of Sequences: 336
Number of extensions: 2834
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)