Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0057
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    66   4e-12
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    56   4e-09
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    46   6e-06
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    31   0.13 
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    31   0.13 
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    30   0.39 
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ...    29   0.52 
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    29   0.69 
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    29   0.91 
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa...    27   3.7  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    27   3.7  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   4.8  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    26   4.8  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    26   6.4  

>SPBC839.06 |cta3||P-type ATPase, calcium transporting
            Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 66.5 bits (155), Expect = 4e-12
 Identities = 66/223 (29%), Positives = 93/223 (41%)
 Frame = +1

Query: 46   DRTSPGFKALAKIASLCNRAEFKGGQDGVPILKKEVAGDASEAALLKCMELALGDVLSIR 225
            ++ S  F  L K  +LCN +     + G  ++K    G+ +E AL    +        + 
Sbjct: 431  NQPSDQFIPLLKTCALCNLSTVNQTETGEWVVK----GEPTEIALHVFSKRFNYGKEDLL 486

Query: 226  KRNKKVCEIPFNSTNKYQVSIHESDDPSDPRHLLVMKGAPERILERCSTIFIGGKEKVLD 405
            K N  V E PF+S  K    I+E       ++ +  KGA ERILERCST         L+
Sbjct: 487  KTNTFVREYPFDSEIKRMAVIYEDQQG---QYTVYAKGAVERILERCST----SNGSTLE 539

Query: 406  EEMKEAFNNAYXXXXXXXXXXXXFCDLQLPSDKYPIGYKFNTDDPNFPLDNLRFVGLMSM 585
            E  +E                     L L +        + T   +    +L FV L+ +
Sbjct: 540  EPDRELIIAQMETLAAEGLRV-----LALATKVIDKADNWETLPRDVAESSLEFVSLVGI 594

Query: 586  IXXXXXXXXXXXXKCRSAGIKVIMVTGDHPITAKAIAKSVGII 714
                          C  AGI+V M+TGDHP TAKAIA+ VGII
Sbjct: 595  YDPPRTESKGAVELCHRAGIRVHMLTGDHPETAKAIAREVGII 637


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 54/198 (27%), Positives = 83/198 (41%), Gaps = 10/198 (5%)
 Frame = +1

Query: 157  GDASEAALL--KCMELALGDVLSIRKRNKKVCEIPFNSTNKYQVSIHESDDPSDPRHLLV 330
            G  +E ALL     EL L +V S+R          F+S  K   +I E  D    ++  V
Sbjct: 634  GSKTETALLDMSVKELGLTNVDSMRSSVDIKQFFSFSSDRKASGAIFEYKD----KYYFV 689

Query: 331  MKGAPERILERCSTIFIGGKEKVLDEEMKEA--FNNAYXXXXXXXXXXXXFCDLQLPSDK 504
            +KG PER+L++ +++   G    +++    A  F                 C     S  
Sbjct: 690  VKGMPERVLQQSTSVITNGSLDEVEDMHSHADYFKEMITGYAKRSLRTLGLCYRVFDSWP 749

Query: 505  YPIGYKFNTDDPNFPLD------NLRFVGLMSMIXXXXXXXXXXXXKCRSAGIKVIMVTG 666
             P     N +D + PL       ++ F+G   ++             C+ AG+ V MVTG
Sbjct: 750  -PKDIPTNDEDSSNPLKWEDAFTDMTFLGFFGIMDPIRPDVPLAVKVCQGAGVTVRMVTG 808

Query: 667  DHPITAKAIAKSVGIISE 720
            D+ +TAKAIA   GI +E
Sbjct: 809  DNIVTAKAIASQCGIYTE 826


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 46.0 bits (104), Expect = 6e-06
 Identities = 55/229 (24%), Positives = 94/229 (41%), Gaps = 2/229 (0%)
 Frame = +1

Query: 49  RTSPGFKALAKIASLCNRAEFKGGQDGVPILKKEVAGDASEAALLKCME-LALGDVLSIR 225
           R + G +     A+LCN ++     D +       AG   + AL++C E   L D    R
Sbjct: 366 RRTVGIEKALLAAALCNNSKVHNKADSILDTTCPWAGFPVDVALIECSERFGLKDP---R 422

Query: 226 KRNKKVCEIPFNSTNKYQVSIHESDDPSDPRHLLVMKGAPERILERCSTIF-IGGKEKVL 402
           +   ++ E+ F+S  KY +S+    + S    +  MKGA E++L  C+      G +  L
Sbjct: 423 ETYSRISEVSFSSERKY-MSVAVQYNSS---KMNFMKGATEQVLSSCAYFSDQDGVQHEL 478

Query: 403 DEEMKEAFNNAYXXXXXXXXXXXXFCDLQLPSDKYPIGYKFNTDDPNFPLDNLRFVGLMS 582
             EMKE                    + ++ +     G +          + L F GL  
Sbjct: 479 TAEMKENIQRN---------------EFEMAAS----GLRIIAVASGINTNKLVFHGLFG 519

Query: 583 MIXXXXXXXXXXXXKCRSAGIKVIMVTGDHPITAKAIAKSVGIISEGNE 729
           +                + G++VIM+TGD  +TA +IA+S+G+    N+
Sbjct: 520 INDPPRPQVRESVQYLMTGGVRVIMITGDSVVTAISIARSLGMAIPSND 568


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = +1

Query: 631 RSAGIKVIMVTGDHPITAKAIAKSVGIISEG 723
           R+AGI V M+TGD   TA+ IA S  ++S G
Sbjct: 652 RNAGIHVWMLTGDKVETARCIAISSRLVSRG 682


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 11/25 (44%), Positives = 20/25 (80%)
 Frame = +1

Query: 646 KVIMVTGDHPITAKAIAKSVGIISE 720
           + +M+TGD+P+TA  +A+ VGI+ +
Sbjct: 703 RCMMITGDNPLTAVYVAEQVGIVEK 727


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = -2

Query: 272 LLVELKGISQTFLLRFLIDKTSPRASSMHFSKAASE 165
           L +ELK I+Q  LLRFL  KT P    +  S  A E
Sbjct: 855 LFLELKSIAQQSLLRFLNLKTLPTLMDLSLSYHAEE 890


>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +1

Query: 247 EIPFNSTNK--YQVSIHESDDPSDPRHLLVMKGAPERILERCSTIFIGGKEKVLDEEMK 417
           ++ FN+T    Y++  H       P H+LVMKG  E  +ER   + + G E ++ +++K
Sbjct: 89  DVYFNATRVLVYKLKHHPETKSKYPVHVLVMKGVDEWKIER---LRLDGAEIIMVDQIK 144


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +1

Query: 637  AGIKVIMVTGDHPITAKAIAKSVGIISEGNETV 735
            AGIK  M+TGD   TA  I  S G+I E +  V
Sbjct: 1094 AGIKFWMLTGDKKETAINIGHSCGVIKEYSTVV 1126


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 699 FGNSLGSDGVVSGYHDNLDTGGAALGHGIWYSS 601
           FG S GS G++  +  N  T  A+  HG W SS
Sbjct: 865 FGISKGSGGLIGSFDFNKFTRQASKVHGSWISS 897


>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 618

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 487 QLPSDKYPIGYKFNTDDPNFP 549
           QLP DK P+ Y  +T  P FP
Sbjct: 465 QLPYDKSPLEYIMDTYKPKFP 485


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +1

Query: 562 RFVGLMSMIXXXXXXXXXXXXKCRSAGIKVIMVTGDHPITAKAIAKSVGI 711
           +FVG +  +              +  G KV ++TGD   TA+ +A+ + I
Sbjct: 660 QFVGFLGCMDQVRPDSYQTVSALKQLGKKVCLLTGDQKATARRVAQGLEI 709


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 631 RSAGIKVIMVTGDHPITAKAIAKSVGIISE 720
           ++AGIK+ ++TGD   TA  I  S  +I E
Sbjct: 780 QTAGIKIWVLTGDRQETAINIGMSCKLIDE 809


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +1

Query: 367 STIFIGGKEK-VLDEEMKEAFNN 432
           ST+F+GG  K V +EE+K  F N
Sbjct: 303 STVFVGGLSKFVSEEELKYLFQN 325


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 526 NTDDPNFPLDNLRFVGLMSMI 588
           N +DPNF L NLR + L  ++
Sbjct: 3   NWEDPNFELRNLRVIDLKKIL 23


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.136    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,594,097
Number of Sequences: 5004
Number of extensions: 47649
Number of successful extensions: 159
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)