Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0057
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    25   0.56 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    24   1.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.3  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   5.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   6.9  

>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 405 RGNEGGVQQRLP*TRWSWRACARLLRPSAALRQVPHRLQVQ 527
           RGN G  +++ P T +S    ARL R  A  R +  R + Q
Sbjct: 12  RGNGGTPEEKRPRTAFSGEQLARLKREFAENRYLTERRRQQ 52


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -1

Query: 93  ERSNFGKSLEARASAVV--LYAGLIFSCISFN 4
           E  N  K LE    A++  LY G+++ C+S N
Sbjct: 144 EPKNTNKFLEKGPVALINELYPGVVYKCVSDN 175


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = -3

Query: 229 AS*STRHHREPAPCISVKRLQR--RHRRLPSSESEHHPDH 116
           AS S  H+   +P   +  L     HR LP  +S HH  H
Sbjct: 39  ASNSPDHYERFSPSTHLMDLSSPPEHRDLPIYQSHHHLHH 78


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 517 YKFNTDDPNFPLDNLR 564
           Y +N  + NFP DN+R
Sbjct: 22  YSWNVIEYNFPNDNIR 37


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -2

Query: 281 TWYLLVELKGISQTFLLRFLIDKTSPR--ASSMH 186
           TW LLV   GI+   +    + + SPR  A+SM+
Sbjct: 3   TWLLLVVCLGIACQGITSVTVRENSPRKLANSMN 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.136    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,605
Number of Sequences: 438
Number of extensions: 3477
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)