Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0056
         (534 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g06720.1 68414.m00714 expressed protein contains Pfam domain,...    32   0.21 
At3g01280.1 68416.m00035 porin, putative similar to SP|P42055 34...    30   1.1  
At1g79360.1 68414.m09248 transporter-related low similarity to S...    30   1.1  
At2g29340.2 68415.m03563 short-chain dehydrogenase/reductase (SD...    29   1.5  
At2g29340.1 68415.m03564 short-chain dehydrogenase/reductase (SD...    29   1.5  
At1g65670.1 68414.m07452 cytochrome P450 family protein similar ...    29   1.9  
At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR...    29   2.6  
At4g15300.1 68417.m02342 cytochrome P450 family protein similar ...    29   2.6  
At4g33550.1 68417.m04768 protease inhibitor/seed storage/lipid t...    28   3.4  
At3g30290.1 68416.m03825 cytochrome P450 family protein similar ...    28   3.4  
At4g27010.1 68417.m03885 expressed protein  ; expression support...    28   4.5  

>At1g06720.1 68414.m00714 expressed protein contains Pfam domain,
           PF04950: Protein of unknown function (DUF663)
          Length = 1147

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +2

Query: 125 KESGVSTEVINAAKTGQYSEDKAFKKFVLCFFNKSAILNSDGTLNMDVALAKLPPGVNKS 304
           K   V  +++ + +  +YS D+   K  + FF K    +S+  L  + A   LP G + S
Sbjct: 379 KGRDVGEDLVKSLQNTKYSVDEKLDKTFINFFGKKTSASSETKLKAEDAYHSLPEG-SDS 437

Query: 305 EAQS 316
           E+QS
Sbjct: 438 ESQS 441


>At3g01280.1 68416.m00035 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 276

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +2

Query: 122 VKESGVSTEVINAAKTGQYSEDKAFKKFVLCFFNKSAI-LNSDGTLNMDVALAKLPPGVN 298
           VK  G+ TE+   A+   Y +  + +KF +  F+ + + + S GT   D+ L  +     
Sbjct: 2   VKGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQSR 61

Query: 299 KSEAQSVLEQCKDKT 343
           +    + L+ C D T
Sbjct: 62  RKNITTDLKVCTDST 76


>At1g79360.1 68414.m09248 transporter-related low similarity to
           SP|O76082 Organic cation/carnitine transporter 2 (Solute
           carrier family 22, member 5) (High-affinity
           sodium-dependent carnitine cotransporter) {Homo
           sapiens}; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 527

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 406 CLGPFVVALEDLEGFIGCVLPGLILA 329
           C G FV  L +   F+GC++ GL+L+
Sbjct: 107 CAGSFVKGLPESSFFVGCLIGGLVLS 132


>At2g29340.2 68415.m03563 short-chain dehydrogenase/reductase (SDR)
           family protein similar to tropinone reductase-I
           GI:424160 from [Datura stramonium]
          Length = 262

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 74  LTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKAFKKFVL 211
           L +  K  A ++  + ++ + V+  VIN   +  Y ED +FKK +L
Sbjct: 166 LIQLAKNLACEWAKDGIRANAVAPNVINTPLSQSYLEDVSFKKALL 211


>At2g29340.1 68415.m03564 short-chain dehydrogenase/reductase (SDR)
           family protein similar to tropinone reductase-I
           GI:424160 from [Datura stramonium]
          Length = 307

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 74  LTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKAFKKFVL 211
           L +  K  A ++  + ++ + V+  VIN   +  Y ED +FKK +L
Sbjct: 166 LIQLAKNLACEWAKDGIRANAVAPNVINTPLSQSYLEDVSFKKALL 211


>At1g65670.1 68414.m07452 cytochrome P450 family protein similar to
           Cytochrome P450 90A1 (SP:Q42569) [Arabidopsis thaliana]
          Length = 482

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 203 FVLCFFNKSAILNSDGTLNMDVALAKLPPGVNKSEAQ 313
           F    F    I+++D  LNM++A     PG+ KS AQ
Sbjct: 75  FRTSLFGAKVIISTDIELNMEIAKTNHAPGLTKSIAQ 111


>At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1231

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -2

Query: 275 LAQHPCSMYHLSSRLRIC 222
           +A+ PCS++HLSS  R+C
Sbjct: 831 IAELPCSIFHLSSLRRLC 848


>At4g15300.1 68417.m02342 cytochrome P450 family protein similar to
           Cytochrome P450 90C1 (ROTUNDIFOLIA3) (SP:Q9M066)
           [Arabidopsis thaliana]; contains Pfam profile: PF00067:
           Cytochrome P450
          Length = 487

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 203 FVLCFFNKSAILNSDGTLNMDVALAKLPPGVNKS 304
           F    F   AI++ D  LN+++A A   PGV KS
Sbjct: 73  FRTSLFGDKAIISMDMELNLEMAKANSVPGVTKS 106


>At4g33550.1 68417.m04768 protease inhibitor/seed storage/lipid
          transfer protein (LTP) family protein contains Pfam
          protease inhibitor/seed storage/LTP family domain
          PF00234
          Length = 115

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 23 LICLAFAVFNCGADNVHLTETQ 88
          L+ LA A+F  G+DNVH+ + Q
Sbjct: 9  LVILAIALFMIGSDNVHVAKAQ 30


>At3g30290.1 68416.m03825 cytochrome P450 family protein similar to
           Cytochrome P450 85 (SP:Q43147) {Lycopersicon
           esculentum}; similar to GB:C71417 from [Arabidopsis
           thaliana] (Nature 391 (6666), 485-488 (1998))
          Length = 408

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 203 FVLCFFNKSAILNSDGTLNMDVALAKLPPGVNKSEAQ 313
           F    F    I++ D  LNM++A     PG+ KS A+
Sbjct: 5   FRTSLFGGKVIISMDNELNMEMAKTNRTPGITKSIAR 41


>At4g27010.1 68417.m03885 expressed protein  ; expression supported
           by MPSS
          Length = 2535

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = +2

Query: 164 KTGQYSEDKAFKKFVLCFFN--KSAILNSDGTLNMDVALAKLPPGVNKSE---AQSVLEQ 328
           K  ++S  KAF  F + F    K  +L+S   LN     +K+ PG+ K +     SVL  
Sbjct: 186 KVKKHSTRKAFVGFAISFLEVGKPGLLSS--VLNKKEMYSKVLPGLGKDDDDTVASVLST 243

Query: 329 CKDK 340
            KDK
Sbjct: 244 LKDK 247


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,180,530
Number of Sequences: 28952
Number of extensions: 185621
Number of successful extensions: 584
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)