Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0054
(308 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 40 8e-05
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 37 8e-04
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 36 0.002
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 31 0.052
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 0.37
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 27 0.64
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 25 2.6
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 25 2.6
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 25 3.4
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|... 25 3.4
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 25 3.4
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 24 5.9
SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit ... 24 5.9
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 24 5.9
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 39.9 bits (89), Expect = 8e-05
Identities = 26/79 (32%), Positives = 42/79 (53%)
Frame = +1
Query: 67 LVKEAKIIAMTCTHAALKRSELLQMGFKYDNILMEESPQILEIETFIPLLLQNPQDGRSR 246
L++ A +I TC A +R +K+ ++L++E+ Q E E IPL+L
Sbjct: 534 LLRAAHVICCTCVGAGDRRISK----YKFRSVLIDEATQASEPECMIPLVLG-------- 581
Query: 247 LKRWIMIGDHHQLPPVDKN 303
K+ +++GDH QL PV N
Sbjct: 582 AKQVVLVGDHQQLGPVVMN 600
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 36.7 bits (81), Expect = 8e-04
Identities = 22/97 (22%), Positives = 52/97 (53%)
Frame = +1
Query: 1 RNWKSSEAFELLRSGLDRSKYLLVKEAKIIAMTCTHAALKRSELLQMGFKYDNILMEESP 180
+++ ++ +LLR +++ ++K+A ++ T + + + + ++++E+
Sbjct: 1327 QSFTKNKEVDLLRK---KAQKAILKQADVVCATLSGSG--HDLVAHSSLNFSTVIIDEAA 1381
Query: 181 QILEIETFIPLLLQNPQDGRSRLKRWIMIGDHHQLPP 291
Q +E++T IPL R K+ I++GD +QLPP
Sbjct: 1382 QAVELDTIIPL--------RYGAKKCILVGDPNQLPP 1410
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 35.5 bits (78), Expect = 0.002
Identities = 22/75 (29%), Positives = 40/75 (53%)
Frame = +1
Query: 67 LVKEAKIIAMTCTHAALKRSELLQMGFKYDNILMEESPQILEIETFIPLLLQNPQDGRSR 246
L++EA I+ T + A LL G + ++++E+ Q +E+ + IPL +
Sbjct: 1484 LLQEADIVCATLS--ASGHELLLNAGLTFRTVIIDEAAQAVELSSIIPL--------KYG 1533
Query: 247 LKRWIMIGDHHQLPP 291
+ +M+GD +QLPP
Sbjct: 1534 CESCVMVGDPNQLPP 1548
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 30.7 bits (66), Expect = 0.052
Identities = 9/18 (50%), Positives = 17/18 (94%)
Frame = +1
Query: 250 KRWIMIGDHHQLPPVDKN 303
++++++GDH+QLPP+ KN
Sbjct: 1084 EKFVLVGDHYQLPPLVKN 1101
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 0.37
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Frame = +3
Query: 153 RQHTDGGITSNPRDRDVHTAAPAEPA---GRQVP----AEALDHDRRPPPAAPGR 296
R + G I P+ R P A GRQ P + A+ + PPPA PGR
Sbjct: 344 RSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGR 398
Score = 25.0 bits (52), Expect = 2.6
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = +3
Query: 216 PAEPAGRQVPAEAL--DHDRRPPPAAPGRQEHG 308
P P +V A AL + R PPP P R+ G
Sbjct: 291 PLPPPSSRVSAAALAANKKRPPPPPPPSRRNRG 323
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 27.1 bits (57), Expect = 0.64
Identities = 23/76 (30%), Positives = 38/76 (50%)
Frame = +1
Query: 64 LLVKEAKIIAMTCTHAALKRSELLQMGFKYDNILMEESPQILEIETFIPLLLQNPQDGRS 243
+L++ A +I MT T R L ++ K +EE+ +LE IP + +
Sbjct: 678 ILLRGANVIGMTTTGLNKYRDILERINPKI--CFIEEAADVLE-GPIIPAVFPS------ 728
Query: 244 RLKRWIMIGDHHQLPP 291
L++ ++IGDH QL P
Sbjct: 729 -LEQLVLIGDHKQLRP 743
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 25.0 bits (52), Expect = 2.6
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +1
Query: 181 QILEIETFIPLLLQNPQDGRSRLKRWIMIGDH 276
Q+ +E+FI L + +GR + + ++ DH
Sbjct: 107 QLARLESFIMTLKNSDPEGRDEMLKSVVFSDH 138
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 25.0 bits (52), Expect = 2.6
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1
Query: 155 SYLKPICNNSERLRAACVHVIAII 84
SYL+ +C N L C+ I I+
Sbjct: 156 SYLQSLCENGNNLVKTCIDTIPIL 179
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 24.6 bits (51), Expect = 3.4
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = +3
Query: 108 RRPQTFRIIANGFQIRQHTDGGITSN 185
+R ++F+ +A+GF R+HT+ + S+
Sbjct: 794 KRVRSFQAVAHGFLSRRHTEYELLSS 819
>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 24.6 bits (51), Expect = 3.4
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = +3
Query: 207 TAAPAEPAGRQVPAEALDHDRRPPPAAPGRQEH 305
T P +P+ P + + PP P R+EH
Sbjct: 153 TPVPKKPSKPSKPRKKVPVSHPLPPTPPSREEH 185
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 24.6 bits (51), Expect = 3.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 106 HAALKRSELLQMGFKYDNILMEESPQILEIETFI 207
HA K E L++ KY L EES L++ +F+
Sbjct: 53 HAPEKYIEFLELRLKYLRGLAEESDPNLKLPSFL 86
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 23.8 bits (49), Expect = 5.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 193 IETFIPLLLQNPQDGRSRLKRW 258
I T +PL LQ+P D S + W
Sbjct: 657 ISTDLPLTLQSPSDEFSTIYAW 678
>SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit
Apc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 189
Score = 23.8 bits (49), Expect = 5.9
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +3
Query: 36 EVRTGSVQVPVGQRSENNRDDVH 104
E TG V VPVG N DVH
Sbjct: 115 EEPTGWVHVPVGDFGRNGLLDVH 137
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 23.8 bits (49), Expect = 5.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 89 IIFASLTNRYLDRSSPDLSSSKASELFQF 3
I+F SL ++L P+L+ ++ S+L F
Sbjct: 417 IVFLSLEYKFLTNIQPELNDAEKSQLDGF 445
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,226,328
Number of Sequences: 5004
Number of extensions: 21958
Number of successful extensions: 73
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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