Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0053
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)             175   4e-44
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)             156   2e-38
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)              152   3e-37
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)             144   8e-35
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)         73   3e-13
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)              72   4e-13
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)         71   9e-13
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         68   8e-12
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)          62   3e-10
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   8e-07
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         50   1e-06
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)         35   0.070
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)            32   0.49 
SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score =  175 bits (425), Expect = 4e-44
 Identities = 86/150 (57%), Positives = 98/150 (65%)
 Frame = +3

Query: 231 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPE 410
           L+F+A   +D       VT KV  D+ IG    G +++GLFG T PKT  NF  LA K +
Sbjct: 8   LVFVAFVNADTETTA-SVTKKVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQ 66

Query: 411 GEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAG 590
           G GYK S FHRVIKNFMIQ             SIYG+ F+DENF LKHYG GWL MANAG
Sbjct: 67  GFGYKDSIFHRVIKNFMIQGGDFTNKDGTGGYSIYGKYFDDENFNLKHYGPGWLCMANAG 126

Query: 591 KDTNGSQFFITTGKTPWLDGRHVVFGKVLE 680
           K+TNGSQF+ITT KT WLDG H  FGKVLE
Sbjct: 127 KNTNGSQFYITTIKTSWLDGSHTCFGKVLE 156


>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score =  156 bits (378), Expect = 2e-38
 Identities = 88/168 (52%), Positives = 106/168 (63%), Gaps = 18/168 (10%)
 Frame = +3

Query: 231 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFG-------------KTVPK 371
           L F+AS+ +    K P VT KV FD+ IG +  G I IGLF              +++  
Sbjct: 12  LFFLASSAA----KDPIVTKKVFFDITIGGEKAGRIEIGLFVIIKTYYLLATRLVESLIG 67

Query: 372 TTENFFQL-----AQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDE 536
           T   +F        +  +G GYK S FHRVI++FMIQ            +SIYG++F DE
Sbjct: 68  TNFRYFDTYYCCTIESQKGFGYKNSIFHRVIQDFMIQGGDFTKGDGTGGKSIYGQKFADE 127

Query: 537 NFKLKHYGAGWLSMANAGKDTNGSQFFITTGKTPWLDGRHVVFGKVLE 680
           NFKL+HYGAGWLSMANAGKDTNGSQFFITT KTPWLDGRHVVFGKVL+
Sbjct: 128 NFKLQHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLK 175


>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score =  152 bits (368), Expect = 3e-37
 Identities = 74/134 (55%), Positives = 89/134 (66%)
 Frame = +3

Query: 279 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNF 458
           +V  +V FD+ IG+ + G IV+ L    VP T ENF  L    +G GYKGS FHR+I  F
Sbjct: 134 RVNPRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQF 193

Query: 459 MIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTGKTP 638
           M Q            +SIYG +FEDENF LKH GAG LSMAN+G +TNGSQFF+TT KT 
Sbjct: 194 MCQGGDFTKHNGTGGKSIYGAKFEDENFVLKHTGAGVLSMANSGPNTNGSQFFLTTEKTD 253

Query: 639 WLDGRHVVFGKVLE 680
           WLDG+HVVFG V+E
Sbjct: 254 WLDGKHVVFGNVIE 267


>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score =  144 bits (348), Expect = 8e-35
 Identities = 74/133 (55%), Positives = 83/133 (62%)
 Frame = +3

Query: 276 PKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKN 455
           PK T+   FD++IG    G IV+ L    VPKT ENF  L    +G GYKGS FHRVI  
Sbjct: 2   PKTTY---FDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPG 58

Query: 456 FMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTGKT 635
           FM Q            +SIYG +F DENF LKH G G LSMANAG  TNGSQFF+ T KT
Sbjct: 59  FMCQGGDFTRGDGTGGKSIYGAKFADENFNLKHTGPGILSMANAGPGTNGSQFFLCTAKT 118

Query: 636 PWLDGRHVVFGKV 674
            WLDG+HVVFG V
Sbjct: 119 SWLDGKHVVFGSV 131


>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
          Length = 145

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 30/58 (51%), Positives = 41/58 (70%)
 Frame = +3

Query: 507 SIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTGKTPWLDGRHVVFGKVLE 680
           S+YG  FEDE+F + H   G + MAN G+ TNGSQF+IT    PW+D ++V FG+V+E
Sbjct: 51  SVYGPLFEDEDFSVAHNRRGVVGMANKGRHTNGSQFYITLQPAPWMDTKYVAFGQVIE 108


>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 32/35 (91%), Positives = 33/35 (94%)
 Frame = +3

Query: 576 MANAGKDTNGSQFFITTGKTPWLDGRHVVFGKVLE 680
           MANAGKDTNGSQFFITT KT WLDG+HVVFGKVLE
Sbjct: 1   MANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLE 35


>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
          Length = 99

 Score = 70.9 bits (166), Expect = 9e-13
 Identities = 34/59 (57%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
 Frame = +3

Query: 507 SIYGERFEDENFK-LKHYGAGWLSMANAGKDTNGSQFFITTGKTPWLDGRHVVFGKVLE 680
           SI+G  FEDE  + L+H     +SMANAG +TNGSQFFIT   TPWLD +H VFG+V++
Sbjct: 8   SIWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKHTVFGRVVK 66


>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 67.7 bits (158), Expect = 8e-12
 Identities = 32/44 (72%), Positives = 36/44 (81%)
 Frame = +3

Query: 549 KHYGAGWLSMANAGKDTNGSQFFITTGKTPWLDGRHVVFGKVLE 680
           +H   G LSMAN+G +TNGSQFFITT  TP LDGRHVVFGKVL+
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRHVVFGKVLK 231


>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
          Length = 49

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 27/35 (77%), Positives = 29/35 (82%)
 Frame = +3

Query: 570 LSMANAGKDTNGSQFFITTGKTPWLDGRHVVFGKV 674
           LSMANAG  TNGSQFF+ T KT WLDG+HVVFG V
Sbjct: 3   LSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSV 37


>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
 Frame = +3

Query: 519 ERFEDENFKL----KHYGAGWLSMANAGKDTNGSQFFITTGKTPWLDGRHVVFGKVL 677
           E  +DE   L     H   G +SMAN G ++NGSQFFI  GK P LD ++ +FGK L
Sbjct: 286 EELDDEALDLMGRCNHNARGTVSMANNGPNSNGSQFFICYGKQPHLDMKYTMFGKYL 342


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 30/58 (51%), Positives = 34/58 (58%)
 Frame = +3

Query: 507 SIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTGKTPWLDGRHVVFGKVLE 680
           SIYG  F DE F+ KH     LSMAN G +TNGSQFFI           HVVFG V++
Sbjct: 31  SIYGGTFGDECFEFKHERPMLLSMANRGPNTNGSQFFII----------HVVFGHVIQ 78


>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 40/125 (32%), Positives = 54/125 (43%), Gaps = 6/125 (4%)
 Frame = +3

Query: 324 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXX 503
           ++G I I L     P +T NF  LA    G  Y G++FHRVI  FM+Q            
Sbjct: 31  SLGEIEIELDADKAPISTANF--LAYVDSGY-YAGTQFHRVIPGFMVQGGGFDADMQQKD 87

Query: 504 RSIYGERFEDENFKLKHYGAGWLSMANAG-KDTNGSQFFITTGKTPWLDG-----RHVVF 665
                +   D      H   G L+MA    +D+  SQFFI      +LD       + VF
Sbjct: 88  TQAPIKNEADNGL---HNVRGTLAMARTQVRDSATSQFFINHKDNAFLDHGSRDFGYAVF 144

Query: 666 GKVLE 680
           GKV++
Sbjct: 145 GKVVK 149


>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
          Length = 454

 Score = 34.7 bits (76), Expect = 0.070
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = +3

Query: 324 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIK 452
           ++G I I L+GK  PK   NF QL    EG  Y  + FHR++K
Sbjct: 11  SVGDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIVK 50


>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
          Length = 48

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
 Frame = +3

Query: 330 GTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSKFHR 443
           G ++  LF   VPKT ENF  L    +G G        YKG  FHR
Sbjct: 2   GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47


>SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 286 VTLGPLGISSDLALAMNNKIPKAIVRVPMIKTSL 185
           VTL PL +S+    ++N +   A+VRV  I  SL
Sbjct: 38  VTLSPLQVSAKTGASLNGRAEVAMVRVSPILASL 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,716,828
Number of Sequences: 59808
Number of extensions: 381580
Number of successful extensions: 640
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)