Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0052
         (664 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99288-9|CAB16551.2|  335|Caenorhabditis elegans Hypothetical pr...    31   0.55 
U58756-2|AAC48083.2|  322|Caenorhabditis elegans Hypothetical pr...    30   1.3  

>Z99288-9|CAB16551.2|  335|Caenorhabditis elegans Hypothetical
           protein ZK262.10 protein.
          Length = 335

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 82  VP*LINVKTIVITVLFL*SYHDFLHCHNGTYRSLCVY 192
           +P +  V +I+I +LF+   HD  H H G YR L ++
Sbjct: 10  IPKIGGVFSIIINLLFIFIAHDDKHVHFGNYRFLLIF 46


>U58756-2|AAC48083.2|  322|Caenorhabditis elegans Hypothetical
           protein F58F9.3b protein.
          Length = 322

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +3

Query: 306 NEKKKSIFMSLRH--N*DYFFNGFFLLT*QRLLRYECVKVLSDI 431
           ++++KSIF S  H     +FF G+F  T     ++ECVK L  I
Sbjct: 202 DKQEKSIFTSKTHVLGLGHFFEGYFEQTPNGKSQWECVKYLKQI 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,930,575
Number of Sequences: 27780
Number of extensions: 217591
Number of successful extensions: 416
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)