BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0049 (733 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_50010| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7 SB_16225| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1 SB_8177| Best HMM Match : TSP_1 (HMM E-Value=6e-38) 28 6.8 >SB_50010| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 580 Score = 30.3 bits (65), Expect = 1.7 Identities = 11/34 (32%), Positives = 21/34 (61%) Frame = +3 Query: 192 DYYLHSNISLFQLLVVIRGNFKIILTTVVIIKLK 293 ++Y H+ +F LLV GNF ++L V+ +++ Sbjct: 31 EFYGHTAFQIFILLVTFYGNFMVVLAVVLFHRMR 64 >SB_16225| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 519 Score = 28.7 bits (61), Expect = 5.1 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = +3 Query: 192 DYYLHSNISLFQLLVVIRGNFKIILTTVVIIKLK 293 +YY H + LLV GNF ++L V+ +++ Sbjct: 27 EYYGHMAFQIIILLVTFYGNFMVVLAVVMFRRMR 60 >SB_8177| Best HMM Match : TSP_1 (HMM E-Value=6e-38) Length = 950 Score = 28.3 bits (60), Expect = 6.8 Identities = 12/41 (29%), Positives = 22/41 (53%) Frame = +3 Query: 180 LFPFDYYLHSNISLFQLLVVIRGNFKIILTTVVIIKLKYSV 302 +F Y N ++ L ++I+GNF ++ V I+ KY + Sbjct: 811 IFSISVYCRLNFTMSYLELLIQGNFLNLIKAEVYIEAKYGI 851 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,433,896 Number of Sequences: 59808 Number of extensions: 296214 Number of successful extensions: 592 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 536 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 577 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1962001171 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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