Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0048
         (702 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00005A9609 Cluster: PREDICTED: similar to USP6 N-ter...    35   2.2  
UniRef50_Q28RA2 Cluster: ComEC/Rec2-related protein; n=2; Rhodob...    33   6.8  
UniRef50_UPI0000519CB3 Cluster: PREDICTED: similar to CG5859-PA;...    33   9.0  

>UniRef50_UPI00005A9609 Cluster: PREDICTED: similar to USP6
           N-terminal like protein (Related to the N terminus of
           tre) (RN-tre), partial; n=1; Canis lupus familiaris|Rep:
           PREDICTED: similar to USP6 N-terminal like protein
           (Related to the N terminus of tre) (RN-tre), partial -
           Canis familiaris
          Length = 386

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 187 SSCFANKSTTGSKSRPTEKIRRETQRADAWVRL 285
           S C  +K   G   R  +K+R+ET RAD W+++
Sbjct: 27  SPCAGDKELPGPSPREAKKLRQETWRADKWIKM 59


>UniRef50_Q28RA2 Cluster: ComEC/Rec2-related protein; n=2;
           Rhodobacteraceae|Rep: ComEC/Rec2-related protein -
           Jannaschia sp. (strain CCS1)
          Length = 706

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +3

Query: 72  PEGLSSFTRTGGRAKAQPGGVGFANNCPSASEGDLTTQE 188
           P GL   T   GRA ++P G GF       ++GDL TQE
Sbjct: 540 PGGLVGLTTDQGRALSRPRGDGFVAGIWLENDGDLITQE 578


>UniRef50_UPI0000519CB3 Cluster: PREDICTED: similar to CG5859-PA;
           n=1; Apis mellifera|Rep: PREDICTED: similar to CG5859-PA
           - Apis mellifera
          Length = 986

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = +1

Query: 112 QRLSQEGWDLLTTARAPPKET*QLKSSCFANKSTTGSKSR 231
           ++ S+E WD++ TA  P ++  Q +S+   + ++TGS SR
Sbjct: 697 RKFSREAWDMVLTAFGPSRDQPQKRSNSGNSGTSTGSASR 736


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 581,918,719
Number of Sequences: 1657284
Number of extensions: 10069219
Number of successful extensions: 23059
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23058
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)