Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0048
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pm...    25   7.9  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   7.9  

>SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pmc4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -1

Query: 390 GYYPIWYTLPSALILGAGLRTPVTVLVELDKEVDVQPNPCISTLS 256
           G+    ++L S    G  L+  ++ L++ DKE+D+Q   C+  ++
Sbjct: 39  GHLKTLHSLISNYTNGRELQNEISSLLKQDKELDLQIQDCMREMT 83


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 187 SSCFANKSTTGSKSRPTEKIRRETQRADAWVRLHVDLF 300
           SSC  ++S    +S P  K   E    D+W+    ++F
Sbjct: 299 SSCLLDESMVTGESVPARKFPLEDNSLDSWMIASCNIF 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,413,751
Number of Sequences: 5004
Number of extensions: 41580
Number of successful extensions: 73
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)