Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0048
         (702 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF457566-1|AAL68796.1|  147|Anopheles gambiae multiprotein bridg...    24   4.0  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    24   5.3  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    23   9.3  

>AF457566-1|AAL68796.1|  147|Anopheles gambiae multiprotein bridging
           factor-like proteinprotein.
          Length = 147

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
 Frame = +1

Query: 118 LSQEGWDLLTTARAPPKET*QLKSSCFANKS-TTGSKSRPTEKIRRETQRADAWVRLHVD 294
           +S+  WD +T  R    +   LK+    NK+   G     T+K    T +     +    
Sbjct: 1   MSESDWDTVTVLRKKAPKAATLKTESAINKARRQGIPVETTQKFNAGTNKQHVAAKNTAK 60

Query: 295 LFVEFDEYGYR 327
           L  E DE  ++
Sbjct: 61  LDRETDELRHK 71


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 70  GPKAFPVSPGQVGEQRLSQEGWDL 141
           G K F   PG++GE+ L  E  D+
Sbjct: 421 GEKGFKGEPGRIGERGLMGEKGDM 444


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 15/57 (26%), Positives = 23/57 (40%)
 Frame = +3

Query: 54   LKNYWWPEGLSSFTRTGGRAKAQPGGVGFANNCPSASEGDLTTQEQLLRE*IYYRIE 224
            L + W+PE  S      G+       +GFA       +G+    E  +R  + YR E
Sbjct: 871  LHDRWYPEIQSVVQCINGKFSHFMSSMGFAGEVELIRQGERDYDEYGIRIYVKYRNE 927


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 611,193
Number of Sequences: 2352
Number of extensions: 10274
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71504505
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)