Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0048
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17280.1 68414.m02105 ubiquitin-conjugating enzyme, putative ...    29   2.3  
At5g44000.1 68418.m05384 glutathione S-transferase C-terminal do...    27   9.1  

>At1g17280.1 68414.m02105 ubiquitin-conjugating enzyme, putative
           similar to ubiquitin conjugating enzyme 6 from [Homo
           sapiens] GI:14029267, [Mus musculus] GI:14029263;
           contains Pfam profile PF00179: Ubiquitin-conjugating
           enzyme
          Length = 237

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = +1

Query: 76  KAFPVSPGQVGEQRLSQEGWDLLTTARAPPKET*QLKSSCFANKSTTGSKSRPTEKIRRE 255
           K FP    +  +Q+L+++    LTT  +P K   +++S    + +   S+    E+ +  
Sbjct: 151 KLFPEYVEKYNQQQLAEQATTQLTTPESPQKSDTKVESEKTIDPTKGDSEGGLKERKKNN 210

Query: 256 TQRADAWVRL 285
            Q   AW+ L
Sbjct: 211 KQGLPAWIIL 220


>At5g44000.1 68418.m05384 glutathione S-transferase C-terminal
           domain-containing protein contains Pfam domain PF00043:
           Glutathione S-transferase, C-terminal domain
          Length = 399

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +1

Query: 139 LLTTARAPPKET*QLKSSCFANKSTTGSKSRPTEKIRRE----TQRADAWVRLHVDL 297
           L++TAR       QL  +  A   ++GS +RPT K R +    T  A + + L+V L
Sbjct: 56  LISTARTAWTTVWQLMMTQLAPSDSSGSYTRPTSKFRLDPTQFTSAASSELHLYVGL 112


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,469,773
Number of Sequences: 28952
Number of extensions: 217609
Number of successful extensions: 445
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)