Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0045
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     31   0.13 
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch...    28   1.2  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.8  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    27   2.8  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    26   4.9  
SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr 1|||...    26   4.9  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    26   4.9  
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    26   6.5  

>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 346 LYNYFTFYVLVIFYTLHYPATNTNKYCSTIMIYTY 450
           ++ YF F+ L++F TL YP    NK+ + + +  Y
Sbjct: 7   VFVYFYFFPLLVFITLQYPRWTFNKWKALLPVSAY 41


>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
           Hus5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
 Frame = +3

Query: 540 KPLLARNGNLYKREYFFPHE----PP*VRLL--LFYTSISDSRALFIYII*EEQMTKQIT 701
           KP  +  G LYK    FP E    PP  R    LF+ ++  S  + + I+ EE+  K   
Sbjct: 48  KPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAI 107

Query: 702 NLKSAIL 722
            +K  +L
Sbjct: 108 TIKQILL 114


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -3

Query: 164 TYYSLFIVWQTFRILLFF-FPCFSIFI 87
           +++ LF  + +F +L F  FPCFS+F+
Sbjct: 178 SFHFLFFSFLSFPLLSFILFPCFSLFL 204


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -2

Query: 549 IEVLGAKNDGSWLLLSLIEFSHLSSSHLPRFDCICINHNCTTIFVGIR 406
           +++   K+   +  L+  E   ++  H PR   IC+ + C  IF  +R
Sbjct: 240 LDIKKQKSSSKFFKLAADELRRINDYHAPRDKIICLLNCCKVIFSYLR 287


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 26/102 (25%), Positives = 44/102 (43%)
 Frame = +3

Query: 387  YTTLSSNEYQQIL*YNYDLYIYSQTWVSENWISEKTL*VRVIARTRHF*LLKPLLARNGN 566
            YT+LS++   +I+  ++D+Y Y + W    +     L   +    +    L+ +L R   
Sbjct: 1006 YTSLSNHLSTEIVKLDHDIYNYEKLWADVGF-RNAVLRASIPKTLQAKIGLEKMLERIPE 1064

Query: 567  LYKREYFFPHEPP*VRLLLFYTSISDSRALFIYII*EEQMTK 692
             Y R  F  +     R +  +   SD  A F YI  E +M K
Sbjct: 1065 SYLRAIFSTYLAS--RFVYQHVVSSDPFAFFDYISTEMKMLK 1104


>SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 327 QNIIEFVCMFGYMMVLIDEDGIVLNKTDINM 235
           + IIE   MF  + VL+ E G ++++ D N+
Sbjct: 221 EGIIELAQMFQDLQVLVIEQGALVDRIDFNI 251


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +3

Query: 288 SYNQTYIQILLYFANQDWFII*LFYFLC 371
           +Y     +IL +F +Q W++    +F+C
Sbjct: 434 TYRSPSKEILAFFIDQTWYLFYALFFIC 461


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 501 VRVIARTRHF*LLKPLLARNGNL-YKREYFFPHEPP*VRLLLFYT 632
           V+VIA T     L P L R+G L  K E+  P+E   V +L  ++
Sbjct: 325 VKVIAATNRVDTLDPALLRSGRLDRKLEFPLPNEEARVGILRIHS 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,339
Number of Sequences: 5004
Number of extensions: 52768
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)