Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0045
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0654 - 12662931-12663200,12663296-12663550,12664097-126642...    29   3.9  
01_07_0065 - 40851101-40851247,40851352-40851495,40851781-408518...    29   3.9  

>02_02_0654 - 12662931-12663200,12663296-12663550,12664097-12664268,
            12664354-12664581,12664727-12664860,12665018-12665101,
            12665332-12665538,12665641-12665973,12666175-12666281,
            12666439-12666593,12666778-12666810,12666924-12666972,
            12667152-12667312,12667413-12668313,12668391-12668481,
            12668558-12668749
          Length = 1123

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +1

Query: 223  SIETHVNISFV*HYAVFIYQYHHITKHTYKFYYILLTKIGSLYNYFTFYVLVI 381
            S+E   NI     Y V IY          KF+Y L   + S +NYFTF+ +++
Sbjct: 951  SVEFIYNIIQGILYTVIIYAMIGYDWKASKFFYFLFFIVSS-FNYFTFFGMML 1002


>01_07_0065 -
           40851101-40851247,40851352-40851495,40851781-40851872,
           40851954-40852035,40852127-40852193,40852284-40852375,
           40852470-40852586,40852764-40852881,40852969-40853161,
           40853258-40853339,40853607-40853744,40853829-40854023
          Length = 488

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 292 ITKHTYKFYYILLTKIGSLYNYFTFYVLVIFYTLHYP 402
           + K  Y F YI +T   +   +  FY LV    LHYP
Sbjct: 365 LNKQLYTFSYICVTAGAAGIVFCMFYFLVDILNLHYP 401


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,633,259
Number of Sequences: 37544
Number of extensions: 253301
Number of successful extensions: 418
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)