Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0045
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024211-8|AAF36062.1|  832|Caenorhabditis elegans Hypothetical ...    31   1.1  
AF038608-2|AAU05595.1|  297|Caenorhabditis elegans Serpentine re...    29   2.6  
Z81547-1|CAB04459.1|  354|Caenorhabditis elegans Hypothetical pr...    28   8.0  
U13875-12|AAA21157.2|  321|Caenorhabditis elegans Hypothetical p...    28   8.0  

>AC024211-8|AAF36062.1|  832|Caenorhabditis elegans Hypothetical
           protein Y76B12C.1 protein.
          Length = 832

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 283 YHHITKH-TYKFYYILLTKIGSLYNYFTFYVLVIFYTLHYPATNTNKYCSTIMIYTY 450
           Y ++T++ T+ +Y+  +  IG LYN F   V+ IF  +H+   N   Y +    + +
Sbjct: 221 YFYVTENSTFFYYWTAIISIGILYNMFAM-VIFIFDDVHFGYFNQWLYVNLFFDFCF 276


>AF038608-2|AAU05595.1|  297|Caenorhabditis elegans Serpentine
           receptor, class z protein70 protein.
          Length = 297

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -3

Query: 170 NYTYYSLFIVWQTFRILLF 114
           N  +YSLFI+ QTF +LLF
Sbjct: 92  NIIFYSLFIIDQTFELLLF 110


>Z81547-1|CAB04459.1|  354|Caenorhabditis elegans Hypothetical
           protein F53F8.1 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 647 SSFIYLYYLGGTNDKTNYKFKICY 718
           SSF+Y  +LGG   K+  KF +CY
Sbjct: 8   SSFLYFLFLGGK--KSLLKFSVCY 29


>U13875-12|AAA21157.2|  321|Caenorhabditis elegans Hypothetical
           protein C26E6.3 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 259 HYAVFIYQYHHITKHTYKFYYILLTKIG 342
           H  +++Y + H TK +  F Y+ LT +G
Sbjct: 122 HIPLYLYPFLHTTKVSRSFEYLRLTSLG 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,200,725
Number of Sequences: 27780
Number of extensions: 280058
Number of successful extensions: 695
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)