Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0044
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    30   0.44 
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    27   2.3  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   3.1  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    26   5.4  
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    26   5.4  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    25   9.4  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    25   9.4  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   9.4  

>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = +2

Query: 539 ERRIITSAIATLIYQDQSYLENGIAFDDLIKAASDQESKYSKKQLENIVNKELSSGSLVK 718
           +R + TS  A      Q YL+     DD +       S++SK +++  VN  L + +L+K
Sbjct: 26  QRGVATSKYAVHASCLQEYLDKEAWKDDTLIIDLRPVSEFSKSRIKGSVNLSLPA-TLIK 84

Query: 719 LPNGNLALGPAD-HDVDSSDSFR 784
            P  ++A   ++ HDVD    F+
Sbjct: 85  RPAFSVARIISNLHDVDDKRDFQ 107


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +2

Query: 353 ICKFMLK-CYKVQPKDTKADLKRCLK--EKSIYKVDYKDNVSYRNAAKWRKKSKNNTM 517
           IC+ M K C +V P+       RCLK  ++ I+K   +     +N  KWRK  +NN++
Sbjct: 23  ICRSMRKKCDEVHPQ-----CGRCLKAGKQCIWK---QPGTERKNKTKWRKAMQNNSI 72


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -1

Query: 731  YHLVISLNYQSLILCLQYSPIVFWSTLIPDQKQLL 627
            +H+V++ +YQ ++L  QY   V W  +I D+ Q +
Sbjct: 949  FHVVVT-SYQLVVLDAQYFQSVKWQYMILDEAQAI 982


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 350 RICKFMLKCYKVQPKDTKADLKRCLKEKSIYKVDY 454
           ++  FM   Y    K+T  + K+  KE+++  +DY
Sbjct: 134 QLMDFMKGFYVTYTKETAREFKKAFKERNLESMDY 168


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 548 IITSAIATLIYQDQSYLENGIAF 616
           ++T  +   +Y D +YL+NG++F
Sbjct: 50  LMTEPLEDSMYSDNNYLDNGVSF 72


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 398 TKADLKRCLKEKSIYKVDYKDNVSYRNAAKWRKK 499
           T ++L RC KE    K+ + D++S +   + RK+
Sbjct: 334 THSELLRCYKELVTPKISHVDSISIKAQEEERKR 367


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = -2

Query: 235 PYIQAAY*ILLTR-KVAIFTYNRYLNTVAFQC-IHYNCNCDCTIN 107
           P    A  +LL R +V  F    Y ++    C   Y CNCDC  N
Sbjct: 369 PVHSLAVGLLLNRSQVHYFRDLGYQHSTIQHCGQEYGCNCDCPFN 413


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +2

Query: 356 CKFMLKCYKVQPKDTKADLKRCLKEKSIYKVDYKDNVSYRNA----AKWRK 496
           C F+  C K  PKD +A  +   K K I K  Y  N S +      AKW++
Sbjct: 232 CDFVSNCLKKNPKD-RATAEYLSKHKFIKK--YCPNTSVKEVVASYAKWKE 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,214
Number of Sequences: 5004
Number of extensions: 58351
Number of successful extensions: 187
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)