Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0044
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    27   0.20 
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    25   0.61 
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                25   0.61 
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    25   0.81 
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    25   0.81 
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   5.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   7.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   10.0 
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   10.0 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   10.0 

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 5/130 (3%)
 Frame = +2

Query: 320 RARKSRPDANRICKFMLKCYKVQPKDTKADLKRCLKEKSIYKVDYKDNVSYRNAAKWRK- 496
           R R    D NR  K   + Y+    + +  L+     K   +   ++  SY+N  ++RK 
Sbjct: 233 RERSCSRDRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKY 292

Query: 497 ----KSKNNTMSAAIATSERRIITSAIATLIYQDQSYLENGIAFDDLIKAASDQESKYSK 664
               K ++   +    + E +II+S     I+ + +Y  N   +++     ++      K
Sbjct: 293 RERSKERSRDRTERERSREPKIISSLSNKTIHNNNNYNNNN--YNNNYNNYNNNNYNNYK 350

Query: 665 KQLENIVNKE 694
           K   NI+N E
Sbjct: 351 KLYYNIINIE 360


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
 Frame = +2

Query: 320 RARKSRPDANRICKFMLKCYKVQPKDTKADLKRCLKEKSIYKVDYKDNVSYRNAAKWRK- 496
           R R    D NR  +   + Y+    + +  L+     K   +   ++  SY+N   +RK 
Sbjct: 233 RERSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSYRKY 292

Query: 497 ----KSKNNTMSAAIATSERRIITSAIATLIYQDQSYLEN 604
               K ++   +    + ER+II+S      Y + +Y  N
Sbjct: 293 RETSKERSRDRTERERSKERKIISSLSNNYNYNNNNYKYN 332


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 359 KFMLKCYKVQPKDTKADLKRCLKEKSIYKVDYKDNVSYRN 478
           K   K Y++ P+  K D +  L  ++  K  YK+N+  +N
Sbjct: 6   KLANKFYRISPQILKNDKRIYLSPRTPIKNVYKNNIETKN 45


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
 Frame = +2

Query: 326 RKSRPDANRICKFMLKCYKVQPKDTKADLKRCLKEKSIYKVDYKDNVSYRNAAKWRK--- 496
           R    D NR  K   + Y+    + +  L+     K   +   ++  SY+N  K+RK   
Sbjct: 2   RSCSRDRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNERKYRKYRE 61

Query: 497 --KSKNNTMSAAIATSERRIITSAIATLIYQDQSYLEN 604
             K ++   +    + E +II+S     I+ + +Y  N
Sbjct: 62  RSKERSRDRTERERSREPKIISSLSNKTIHNNNNYNNN 99


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
 Frame = +2

Query: 326 RKSRPDANRICKFMLKCYKVQPKDTKADLKRCLKEKSIYKVDYKDNVSYRNAAKWRK--- 496
           R    D NR  K   + Y+    + +  L+     K   +   ++  SY+N  K+RK   
Sbjct: 2   RSCSKDRNREYKEKDRRYEKLYNEKEKLLEERTSRKRYSRSREREQKSYKNERKYRKYRE 61

Query: 497 --KSKNNTMSAAIATSERRIITSAIATLIYQDQSYLEN 604
             K ++   +    + E +II+S     I+ + +Y  N
Sbjct: 62  RSKERSRDRTERERSREPKIISSLSNKTIHNNNNYNNN 99


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
 Frame = +2

Query: 320 RARKSRPDANRICKFMLKCYKVQPKDTKADLKRCLKEKSIYKVDYKDNVSYRNAAKWRK- 496
           R R    D NR  +   + Y+    + +  L+     K   +   ++  SY+N  ++RK 
Sbjct: 222 RERSCSRDRNREYRKKDRQYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNEREYRKY 281

Query: 497 ----KSKNNTMSAAIATSERRIITSAIATLIYQDQSY 595
               K ++        + E +II+S     I+ + +Y
Sbjct: 282 GKTSKERSRDRMERERSKEPKIISSLSNKTIHNNNNY 318


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 400 CVLWLYFIALQHKFTNSVRI 341
           CV+WL F+ L     N+V +
Sbjct: 858 CVIWLAFVPLYFGTGNNVAL 877


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 792 LSNLKLSELSTSWSA 748
           ++++K SELS SW A
Sbjct: 427 ITSVKSSELSISWDA 441


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 15/59 (25%), Positives = 24/59 (40%)
 Frame = +2

Query: 320 RARKSRPDANRICKFMLKCYKVQPKDTKADLKRCLKEKSIYKVDYKDNVSYRNAAKWRK 496
           R R    D NR  K   + Y+    + K  L+     K   +   ++  SY+N   +RK
Sbjct: 233 RERSCSRDRNREYKKKDRRYEKLHNEKKKLLEERTSRKRYSRSREREQKSYKNENSYRK 291


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 470 SSHYLYNLLYIYFS 429
           S HYL  LLYI F+
Sbjct: 46  SLHYLLALLYILFT 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,791
Number of Sequences: 438
Number of extensions: 4624
Number of successful extensions: 20
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)