Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0044
(794 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g26680.1 68414.m03250 transcriptional factor B3 family protei... 31 1.2
At5g01730.1 68418.m00091 expressed protein 29 2.7
At4g22970.1 68417.m03315 peptidase C50 family protein contains P... 29 2.7
At1g54940.1 68414.m06274 glycogenin glucosyltransferase (glycoge... 29 3.6
At5g12290.1 68418.m01445 expressed protein similarity to NCA2 pr... 29 4.7
At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1) (... 28 6.2
At4g03360.1 68417.m00458 ubiquitin family protein contains INTER... 28 8.2
At4g02950.1 68417.m00402 ubiquitin family protein contains INTER... 28 8.2
At2g27150.1 68415.m03263 aldehyde oxidase 3 (AAO3) identical to ... 28 8.2
>At1g26680.1 68414.m03250 transcriptional factor B3 family protein
low similarity to reproductive meristem gene 1 from
[Brassica oleracea var. botrytis] GI:3170424,
[Arabidopsis thaliana] GI:13604227; contains Pfam
profile PF02362: B3 DNA binding domain
Length = 920
Score = 30.7 bits (66), Expect = 1.2
Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Frame = +2
Query: 458 DNVSYRNAAKWRKKSKNNTMSAAIATSERRIITSAIATLIYQDQSYL-ENGIAFDDLIKA 634
D + N+++ ++ SKN ++ + S + +Y+DQ YL N ++ + L K
Sbjct: 407 DQTNIGNSSRKKRVSKNPREKVESSSDHSSFVGSVNPSSLYKDQLYLPRNFVSSNFLDKR 466
Query: 635 ASDQESKYSKKQLENIVNKELSSGSLVKLPNGNLALGPADHDVDSSDSFRFE 790
S+ K + + +V K L L G + + + + DSF+F+
Sbjct: 467 CSEIVLKNERGEKRTLVLKHFKK-DLTFLKKGWTSFCQVNR-IKAGDSFKFK 516
>At5g01730.1 68418.m00091 expressed protein
Length = 1192
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = +2
Query: 590 SYLENGIAFDDLIKAASDQESKYSKKQLENIVNKELSSGSLVKLPNGNLALGPADHD 760
S LE+G+A DL + +S S Q +IV+ + SS V +P+G G DHD
Sbjct: 715 SCLEDGLANPDLAEISS--YSGQEDPQTMSIVSDD-SSDPEVPIPDGTCFAGDVDHD 768
>At4g22970.1 68417.m03315 peptidase C50 family protein contains Pfam
PF03568: Peptidase family C50
Length = 1773
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 671 IVFWSTLIPDQKQLL*GHQRQFHFLNNFDLG 579
I FW + D K L G Q+ FH L+N D G
Sbjct: 724 IDFWMDCLKDSKAKLIGFQQNFHDLHNKDEG 754
>At1g54940.1 68414.m06274 glycogenin glucosyltransferase
(glycogenin)-related contains similarity to glycogenin-1
from Mus musculus [SP|Q9R062], Rattus norvegicus
[SP|O08730], Homo sapiens [SP|P46976]
Length = 557
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = +2
Query: 488 WRKKSKNNTMSAAIATSERRIITSAIATLIYQDQSYLENGIAFDDLIKAASDQESKYSKK 667
WR K ++N S A+ RR + A T+++ ++Y+ IA I+ + +
Sbjct: 249 WRPKHEDNLASKAVTALPRR-LRVAYVTVLHSSEAYVCGAIALAQSIRQSGSHKDMILLH 307
Query: 668 QLENIVNKEL 697
I NK L
Sbjct: 308 D-HTITNKSL 316
>At5g12290.1 68418.m01445 expressed protein similarity to NCA2
protein, yeast, PIR:S54389~Contains 'Homeobox' domain
signature and profile AA305-328
Length = 602
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +2
Query: 488 WRKKSKNNTMSAAIATSERRIITSAIATLIYQDQSYLENG 607
W KK IA RR++ I I Q QSY+E G
Sbjct: 489 WLKKDSKAQGRGRIARIHRRLLVVEIEKRIMQYQSYIEQG 528
>At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1)
(PRC9) identical to GB:AAC32057 from [Arabidopsis
thaliana] (Genetics (1998) 149 (2), 677-692); identical
to cDNA proteasome subunit prc9 GI:2511583
Length = 250
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 431 KSIYKVDYKDNVSYRNAAKWRKKSKNNTMSAAIATSER 544
+SI K DYKD+ + A + K TM + TSE+
Sbjct: 172 QSILKQDYKDDATREEAVELALKVLTKTMDSTSLTSEK 209
>At4g03360.1 68417.m00458 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 284
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/20 (45%), Positives = 17/20 (85%)
Frame = +2
Query: 572 LIYQDQSYLENGIAFDDLIK 631
++++DQS+L NG+A+ D I+
Sbjct: 254 VLHEDQSFLTNGVAYGDTIQ 273
>At4g02950.1 68417.m00402 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 318
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/20 (45%), Positives = 17/20 (85%)
Frame = +2
Query: 572 LIYQDQSYLENGIAFDDLIK 631
++++DQS+L NG+A+ D I+
Sbjct: 288 VLHEDQSFLTNGVAYGDTIQ 307
>At2g27150.1 68415.m03263 aldehyde oxidase 3 (AAO3) identical to
GP:3172044:gnl:PID:d1029570:AB010080
Length = 1332
Score = 27.9 bits (59), Expect = 8.2
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = +2
Query: 389 PKDTKADLKRCLKEKSIYKVDY-KDNVSYRNAAKWRKKSKNNTMSAAIATSERRIITSAI 565
PKD LK+K KVD D++ YR + +N M AA + +++
Sbjct: 198 PKDHLVTFPEFLKKKE--KVDNGSDHLKYRWTTPFSVAELHNIMEAANSGDSLKLVVGNT 255
Query: 566 ATLIYQDQSYLENGIAFDDL 625
T Y+D+ + I ++
Sbjct: 256 GTGYYKDEERFDRYIDISNI 275
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,536,521
Number of Sequences: 28952
Number of extensions: 278918
Number of successful extensions: 748
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -