Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0043
         (698 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0C1S5 Cluster: Chromosome undetermined scaffold_142, w...    33   5.1  
UniRef50_Q23AM0 Cluster: Putative uncharacterized protein; n=4; ...    33   8.9  

>UniRef50_A0C1S5 Cluster: Chromosome undetermined scaffold_142,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_142,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 2448

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +1

Query: 172 LTCQHSIHRLVNFATFNLGHVWILCQTNQLINPNQSVLC 288
           LTCQ SI+ L    T+ +  +  +CQTNQ  + NQ V C
Sbjct: 701 LTCQSSIYCLSCKPTYIMTKLGCVCQTNQYDDANQCVNC 739


>UniRef50_Q23AM0 Cluster: Putative uncharacterized protein; n=4;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1713

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 162  CLSTYMSTFNSQVGKFCY--IQSRTCMDTVSNKSTYQPQSI 278
            C   +   F+SQ    C   +Q+R C+DT +NK  Y PQ +
Sbjct: 1480 CGQQFKYDFSSQTCVKCLWDVQARKCVDTCTNKQLYDPQKL 1520


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 570,782,495
Number of Sequences: 1657284
Number of extensions: 9828904
Number of successful extensions: 20223
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20222
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)