Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0043
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0940 - 29539138-29539626,29540125-29540531,29540631-295406...    31   0.67 
12_02_1270 + 27466516-27466621,27466722-27466885,27467385-274681...    30   2.0  
10_07_0079 + 12665141-12665167,12665613-12665702,12665783-126663...    28   8.2  

>04_04_0940 -
           29539138-29539626,29540125-29540531,29540631-29540662,
           29540809-29541086,29541164-29542515,29542616-29542874
          Length = 938

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 189 NSQVGKFCYIQSRTCMDTVSNKSTYQPQSISPLHQADSNCTKFL 320
           NS +G+   +     ++ ++N S   P +   LH  DS+C +FL
Sbjct: 39  NSTIGRVAAVAVLAAVNDINNDSNILPGTKLDLHMHDSSCNRFL 82


>12_02_1270 +
           27466516-27466621,27466722-27466885,27467385-27468173,
           27468263-27468479,27469078-27469256,27470233-27470474,
           27470607-27470994
          Length = 694

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +3

Query: 132 GKYSKTRSYLCLSTYMSTFNSQ--VGKFCYIQSRTCMDTVSNKSTYQP--QSISPLHQAD 299
           G   +T  +LC ST  S+  S+     +C +   TC D   + S +QP  Q  +PL  + 
Sbjct: 103 GPNIRTIPFLCNSTSSSSAQSKDSTQDYCKLVWETCKDVTISNSPFQPPLQGGAPLPTSS 162

Query: 300 SNCT 311
           S  T
Sbjct: 163 SKLT 166


>10_07_0079 +
           12665141-12665167,12665613-12665702,12665783-12666310,
           12666341-12667741
          Length = 681

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 327 YHIKISYNYYQLGAKD*LIGVDKLICL 247
           +++K  + YY L  KD +IG+DK++ +
Sbjct: 63  HNLKQCFVYYSLFPKDEIIGIDKIVSM 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,410,148
Number of Sequences: 37544
Number of extensions: 242691
Number of successful extensions: 420
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)