Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0043
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    23   2.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.7  

>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -2

Query: 613 VKSKRSSFGDYFYVQHLCRNLILYEKKKNSFSMATV 506
           ++S +  FG YF    L   +++ + K N+F ++ V
Sbjct: 7   LQSLKKDFGTYFQQYCLHHKILIKKNKCNAFIVSNV 42


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -1

Query: 131  YVIESSDYYIIYHSYLYETNSQTVN 57
            Y+++ S     Y S+LY+++  + N
Sbjct: 948  YIVDESSSSSFYSSFLYKSSESSCN 972


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,488
Number of Sequences: 438
Number of extensions: 3118
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)