Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0042
         (570 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41440.1 68415.m05120 expressed protein                             31   0.72 
At1g07550.1 68414.m00808 leucine-rich repeat protein kinase, put...    30   1.2  
At1g08620.1 68414.m00955 transcription factor jumonji (jmj) fami...    29   2.9  
At5g55180.1 68418.m06879 glycosyl hydrolase family 17 protein si...    28   5.0  
At4g37770.1 68417.m05346 1-aminocyclopropane-1-carboxylate synth...    28   5.0  
At5g35380.1 68418.m04205 protein kinase family protein contains ...    27   6.7  
At2g42830.1 68415.m05302 agamous-like MADS box protein AGL5 / fl...    27   8.8  

>At2g41440.1 68415.m05120 expressed protein
          Length = 544

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 20/73 (27%), Positives = 37/73 (50%)
 Frame = +2

Query: 116 YDKINLQEILENKRLLESYMDCVLGKGKCTPEGKELKDHLQEALETGCEKCTEAQEKGAE 295
           ++ ++++  L+  RLL   M C    G   PE   LK HLQ AL    ++  + ++   E
Sbjct: 392 HEAVSMENELKRLRLLTRRMTCKDLDGLTFPELLSLKSHLQTALLIVKDQTKKIEQLLKE 451

Query: 296 TSIDYLIKNELEI 334
                LI+++L++
Sbjct: 452 DDGWMLIRSQLQL 464


>At1g07550.1 68414.m00808 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 864

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +2

Query: 155 RLLESYMDCVLGKGKCTPEGKELKDHLQEALETGCEKCTEAQEKGAETSIDYLIKNELEI 334
           +++E  M CV    K  P   ++   L E LET CEK  ++QE    + ++  I  + EI
Sbjct: 801 KVVELAMSCVNRTSKERPNMSQVVHVLNECLET-CEKWRKSQEVDLSSPLELSIVVDTEI 859


>At1g08620.1 68414.m00955 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 1183

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +2

Query: 218 ELKDHLQEALETGCEKCTEAQEKGAETSIDYLIKNELEIWKELTAHFDPDGKWR 379
           ++K  L + +  GCE+C + Q K  E +++Y+ K   E  K       P   W+
Sbjct: 107 DVKPALPKGVVRGCEECKDCQ-KEFEDTLNYIAKIRPEAEKYGICRIVPPPSWK 159


>At5g55180.1 68418.m06879 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 460

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 146 ENKRLLESYMDCVLGKGKCTPEGKELKDHLQEALETGC 259
           +NK  +      ++G+  C   GK  K+ LQE L+  C
Sbjct: 355 DNKEKVVPVKPSLVGQTWCVANGKTTKEKLQEGLDYAC 392


>At4g37770.1 68417.m05346 1-aminocyclopropane-1-carboxylate
           synthase, putative / ACC synthase, putative similar to
           1-aminocyclopropane-1-carboxylate synthase, Arabidopsis
           thaliana, GI:940370 [S71174]
          Length = 469

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 321 MNWKFGRS*QPISTPTANGGRSTKTALRPRASSSLNKTSIKL 446
           + W+ G    PI   +ANG R TK AL   A     K ++K+
Sbjct: 152 LKWRTGAEIVPIQCKSANGFRITKVALE-EAYEQAQKLNLKV 192


>At5g35380.1 68418.m04205 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 731

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +2

Query: 206 PEGKELKDHLQEALETGCEKCTEAQEKGAETSIDYLIKN 322
           PE K+L+D  +E+++ G  + +  +  G+ TSI  +I +
Sbjct: 675 PELKKLRDLAEESIKFGVRQPSPIRSSGSATSIQEIISD 713


>At2g42830.1 68415.m05302 agamous-like MADS box protein AGL5 /
           floral homeodomain transcription factor (AGL5) identical
           to SP|P29385 Agamous-like MADS box protein AGL5
           {Arabidopsis thaliana}
          Length = 246

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +2

Query: 182 VLGKGKCTPEGKELKDHLQEALETGCEKCTEAQEKGAETSIDYLIKNELEI 334
           +LG+   +   KELK+ L+  LE G  +    + +     I+Y+ K E+E+
Sbjct: 126 ILGESLGSLNFKELKN-LESRLEKGISRVRSKKHEMLVAEIEYMQKREIEL 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,591,435
Number of Sequences: 28952
Number of extensions: 198770
Number of successful extensions: 575
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)