Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0041
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    33   0.051
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.1  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   1.9  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.9  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    26   5.9  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    26   5.9  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    25   7.8  

>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 32.7 bits (71), Expect = 0.051
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -1

Query: 324 CRV*NCSSFVLISEQQGLIYWLYKVHLIKLIYYDRNLFDR 205
           CR+   S FV+++E + LIY +  + LI  I   +NLF+R
Sbjct: 21  CRIPKVSFFVVLTETEILIYQIRPLTLISKITKSQNLFER 60


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -2

Query: 185 KKLEWRIYS*LQNTNGFLVNNESSILKNTIFIEITVYLS 69
           +KL  RI S L N N  +   ESSI  NT+F ++ V +S
Sbjct: 165 EKLYIRIASILSNANDKVSFKESSINTNTVFKDVYVEVS 203


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 562 FAPKSRDKVKASSAKGLCELGLSNFKRTDHAFR 660
           F   SR  V       LCE G +NF+R  +  R
Sbjct: 549 FKEVSRPSVTTDQGDWLCECGFTNFRRRSNCLR 581


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 644 VRLKLDKPSSHKPFALDAFTLSLLFGANASVA 549
           V L+L +PS+ KP+ L   T  L++  + S A
Sbjct: 62  VALRLHRPSTSKPYLLRIVTKGLIYTPSLSSA 93


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +1

Query: 499 PFCDWSTQWPTVRALVVATDAFAPKSRDKVKASSA 603
           P  D    WPT RA  +    F P+++ ++  S +
Sbjct: 302 PLPDRDVPWPTFRATSIGRCPFVPETKYRLSTSKS 336


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 548 TTKARTVGHCVDQSQNGYTTRRMELLNIRYVIKK 447
           +T ++ + HC    +  YTT  MEL  +  V K+
Sbjct: 374 STNSKQLSHCALDCELCYTTNGMELARLTVVAKE 407


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 468 YSLCDKKNHGVISFNGFYVASR 403
           + + D +N G ++F+GF +A R
Sbjct: 51  WQIADAENRGFLTFSGFVIAMR 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,605,075
Number of Sequences: 5004
Number of extensions: 50839
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)