Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0041
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0078 - 523366-525196,525622-525675,527135-529341                 33   0.28 
11_06_0154 + 20707811-20708210,20709252-20709523                       29   3.5  
11_03_0206 + 11655132-11655232,11655433-11655823                       29   3.5  
07_01_0082 + 606791-606928,607061-607203,607335-607488                 28   6.0  

>05_01_0078 - 523366-525196,525622-525675,527135-529341
          Length = 1363

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +2

Query: 128  LQESHLYFVASCRFSILTFYNSNKSI 205
            L+  HLYFVA C F ++T+Y SNK+I
Sbjct: 1064 LKAYHLYFVA-CPFEMVTYYFSNKTI 1088


>11_06_0154 + 20707811-20708210,20709252-20709523
          Length = 223

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 542 WW*RRMHLHQRVETR*RRLVRKAYVSWVCLI-LNALTTRFERG 667
           WW    ++HQ    R  R + + Y SW C++ LN+ + R E G
Sbjct: 18  WW--TQYIHQVEYNRSNRFIYQFYGSWFCMLDLNSGSKRSEVG 58


>11_03_0206 + 11655132-11655232,11655433-11655823
          Length = 163

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
 Frame = -3

Query: 592 PLPCLYSLVQMHPSLPPRPAL---WATA*TSHKMAT 494
           P P L+S+ Q   S PPRP L   W     SH   T
Sbjct: 79  PRPALHSISQSSRSFPPRPCLQPPWGRLCLSHAQTT 114


>07_01_0082 + 606791-606928,607061-607203,607335-607488
          Length = 144

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 590 FTLSLLFGANASVATTK-ARTVGHCV 516
           FTLS LFGA +++A  K  RTV  CV
Sbjct: 114 FTLSTLFGAFSTLAKLKQTRTVDQCV 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,670,495
Number of Sequences: 37544
Number of extensions: 295615
Number of successful extensions: 630
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)