Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0038
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.80 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.80 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   1.1  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 662 SLPYYHYYYFNILH 703
           SLPYY Y Y N+++
Sbjct: 317 SLPYYKYKYLNVIN 330


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 662 SLPYYHYYYFNILH 703
           SLPYY Y Y N+++
Sbjct: 317 SLPYYKYKYLNVIN 330


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 55  MRYKRQFCSSNVYLFNVMACFLRIFNI 135
           +RY  Q+    VY  N+ + F+RIFN+
Sbjct: 226 VRYVSQW--EEVYFLNMASVFMRIFNL 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,431
Number of Sequences: 438
Number of extensions: 4398
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)