Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0037
         (717 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50155| Best HMM Match : SPRY (HMM E-Value=7.7e-14)                  29   2.8  
SB_38163| Best HMM Match : Complex1_30kDa (HMM E-Value=0.73)           29   2.8  
SB_17066| Best HMM Match : PHD (HMM E-Value=1.6)                       29   2.8  
SB_972| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.6  
SB_41691| Best HMM Match : CstA (HMM E-Value=0.62)                     28   8.7  

>SB_50155| Best HMM Match : SPRY (HMM E-Value=7.7e-14)
          Length = 453

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 319 SEFIKGFRTDAVPRQPRPVNVDFDHQVPPEAPV 417
           S+F K  +TD  P Q  P + D+DH+   E+PV
Sbjct: 347 SDF-KRMQTDCPPSQHGPQSFDYDHKTVGESPV 378


>SB_38163| Best HMM Match : Complex1_30kDa (HMM E-Value=0.73)
          Length = 268

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 595 GNVLNVVGCTNVRWGNDYFMGTTYIGSKNAKKEETC 702
           G+   ++GC +V+   +   G  YIG+   K EE C
Sbjct: 213 GHEYRLIGCWDVKLNIEKHSGMCYIGTHTPKVEEVC 248


>SB_17066| Best HMM Match : PHD (HMM E-Value=1.6)
          Length = 523

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 595 GNVLNVVGCTNVRWGNDYFMGTTYIGSKNAKKEETC 702
           G+   ++GC +V+   +   G  YIG+   K EE C
Sbjct: 468 GHEYRLIGCWDVKLNIEKHSGMCYIGTHTPKVEEVC 503


>SB_972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 542 EDFFGIFGLKNDLGLDFF 489
           E  F I  +KNDLGLDF+
Sbjct: 259 EHVFDILSIKNDLGLDFY 276


>SB_41691| Best HMM Match : CstA (HMM E-Value=0.62)
          Length = 406

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 87  VGNLNYQTLILLFLKTYQFFVCLFNQLMLNAKRM*YMSML*LFVCECVYHKTFTTT 254
           + N+ ++  + L      FF  +FN  +++++      +  LFVC C  HKT  TT
Sbjct: 251 LNNIYHRIALWLTEWAEPFFHFVFNTFLVDSR----FGVFALFVCICTEHKTTKTT 302


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,548,993
Number of Sequences: 59808
Number of extensions: 371016
Number of successful extensions: 941
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)