Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0036
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    27   2.0  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   8.1  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   8.1  
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom...    25   8.1  

>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/71 (22%), Positives = 27/71 (38%)
 Frame = +3

Query: 300 CLCDILIFPFYLLGTYILTRSLFKLILCTTTYRLLQCFLFNVIFLGAFYHLRYCQHVSFI 479
           C   I          Y+LT+S+F     T    +  CF  + I++   Y        SF+
Sbjct: 137 CFASIFFHAIACYALYLLTKSIFSNQKMTAYTVIFYCFSPSGIYMSVGYTESLFAAFSFL 196

Query: 480 SYIVFTRIYAY 512
             ++F +   Y
Sbjct: 197 GLLLFIKKQQY 207


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +3

Query: 399 LLQCFLFNVIFLGAFYHLRYCQHVSFISYIVFTRIYAYTI*IKISYNLILLINFFVKEI 575
           +L C +F+   L      R C+ + FIS  +F+ I  Y +      +LI L N    EI
Sbjct: 648 ILICLIFSQFMLAMGNRPRSCRVLLFISTALFSIIMIYFVFCVFYISLIPLHNSDNSEI 706


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
 Frame = +3

Query: 276 FQLSSTF---KCLCDILIFPFYLLGTYILTRSLFKLILCTTTYRLLQCFLFNVIFLGAFY 446
           FQ SST    + +  +LI    +  T  +  SL + I      RL+   LF   ++   +
Sbjct: 653 FQYSSTVTNKQLVLQVLIIMATVPVTLKIADSLQRNIAIPPILRLVAFGLFITSYIIPSH 712

Query: 447 HLRYCQHVSFISYIVFTRIYAYTI-*IKISYNLILLINFFV 566
           H+R C+H       +    ++ T+  + IS+  +  +  F+
Sbjct: 713 HIRSCKHYFLDRLAILFLTFSPTMCMLSISFEALFYVVLFI 753


>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 418 LMLYFLALFTIYVIANMCHLLVI 486
           L L+FL +F +Y    + HLLVI
Sbjct: 18  LRLFFLVVFGLYSFTLILHLLVI 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,787
Number of Sequences: 5004
Number of extensions: 50981
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)