Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0034
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    27   2.5  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    25   7.7  

>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 22/74 (29%), Positives = 33/74 (44%)
 Frame = -1

Query: 678 NPIE*LISISVSRS*QSKRNEINLRKD*YNFNSD*LITRRNFTRMNQDTDHYYKLNYSIL 499
           NP E L   SV    +S+ NE+ LR     + +     +  F R+    D +   NY  L
Sbjct: 261 NPTETLSEYSVEDIPESELNEMKLRHR-KRYETK----KATFNRLKNTIDDFESGNYDAL 315

Query: 498 FI*YIRTSILVTKY 457
           FI  I T + V ++
Sbjct: 316 FILSIHTPMSVLQH 329


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
 Frame = +3

Query: 264 ARHIQRKKHVIS*TCFGLKINCIHV------RGCFQHYIPLIYFKSKSLSK 398
           ++++Q K+     +CF L I+C H+       G  Q Y  L+  K+K+  K
Sbjct: 366 SKNVQSKEKSKIMSCFTLLISCAHITYLLDCHGIIQFYQKLVETKNKAEGK 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,225,677
Number of Sequences: 5004
Number of extensions: 38391
Number of successful extensions: 65
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)