Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0034
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38140.1 68417.m05385 zinc finger (C3HC4-type RING finger) fa...    28   5.0  
At1g10880.1 68414.m01250 expressed protein contains Pfam profile...    28   5.0  

>At4g38140.1 68417.m05385 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 145

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -2

Query: 146 LCSSSVVFYTCRCI 105
           LC++++VFYTC CI
Sbjct: 11  LCTAAIVFYTCVCI 24


>At1g10880.1 68414.m01250 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 651

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 312 GLKINCIHVRGCFQHYIPLIYFKSKSLSKIEV*NSKLKFKNT*Y 443
           GL+ N  H     + Y P++YF+SK   K+ +   KL F N  Y
Sbjct: 420 GLEYNLNHRWRPIEDYQPIVYFRSKCPEKMVL--DKLTFANNAY 461


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,675,458
Number of Sequences: 28952
Number of extensions: 172085
Number of successful extensions: 237
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)