Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0033
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    33   0.050
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    28   1.1  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    26   4.3  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   5.7  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    26   5.7  
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    25   7.5  
SPBC337.15c |coq7||ubiquinone biosynthesis protein Coq7|Schizosa...    25   7.5  
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.9  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   9.9  

>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 32.7 bits (71), Expect = 0.050
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -1

Query: 440 QNSPN*HPYALHRR-YQSSLSYPGPRVSSTY-RKDPPSFHRCWRLTSPSCSFYH-SHHYA 270
           Q  PN  P+ +H   Y S  SYP P   +TY   +PP       +   S S  H S +Y+
Sbjct: 193 QVHPNRLPHPIHNHPYSSPTSYPPPLCPATYCPSNPPQLAPATAIAPSSQSSQHKSVNYS 252

Query: 269 TSPS 258
            +PS
Sbjct: 253 VTPS 256


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 491 NRLLR*VGYNKNSS*IDQNSPN*HPYALHRRYQS 390
           N L R    N   S +DQN    HPY L +RY++
Sbjct: 208 NNLTRTFWANDEPSPVDQNMYGSHPYYLEQRYKA 241


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 133 EVHLGTVLVDSWGECLLWFFPLG 65
           E  LG  L  SW ECLL F  +G
Sbjct: 228 ESELGQYLHHSWAECLLAFDKIG 250


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +1

Query: 46   DDLRQVNQEERTKEDTHPSYRPKRFPSELLLRSSHTLRGINSALASFNI 192
            DD   V    +   D  P   P     E+LLR SH+L   N+   SF+I
Sbjct: 1771 DDNHSVEDHLKVPTDNEPRRSPSL--KEVLLRGSHSLHS-NNDRTSFDI 1816


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 491 NRLLR*VGYNKNSS*IDQNSPN*HPYALHRRYQSS 387
           N L R    N N + +D+N+   HP+ L  RY  S
Sbjct: 224 NNLTRTFWANGNPTPLDRNAYGTHPFYLEHRYTPS 258


>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 275 NGVNGKMNSLARSNASIYGTKEDLY 349
           NG+N    S   S ASI G+ E LY
Sbjct: 6   NGLNESEGSTPLSTASIIGSSEQLY 30


>SPBC337.15c |coq7||ubiquinone biosynthesis protein
           Coq7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 117 PFWSIAGVSVFFGSFLLVDLAQIIHTSRTKNII 19
           PFW IAG ++  G+ LL   A +  T   + +I
Sbjct: 109 PFWDIAGFALGAGTALLGTKAAMACTEAVETVI 141


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/36 (25%), Positives = 16/36 (44%)
 Frame = +2

Query: 317 ASIYGTKEDLYDRWKRHADPGKKEKTDSDGEGHRGA 424
           + ++   E  Y RWKR   P + ++      G + A
Sbjct: 2   SEVHQESEVEYSRWKRERSPERSQRRSQSPPGEQSA 37


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = +2

Query: 155 YAESIAPSHHSTYAHYYDDEEDGWEMPNFYNETYMKERLHNGVNGKMNSLARSNAS 322
           Y ++ A  H+   AH Y  E +   + ++  + Y+   L +  +GK+  L+    S
Sbjct: 285 YHDAHAKQHYVDTAHCYAMELETQRVWDYAGDNYVHRLLQSETDGKLVELSTDGKS 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,757,438
Number of Sequences: 5004
Number of extensions: 56342
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)