Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0033
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1)                  31   1.1  
SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_29451| Best HMM Match : K_tetra (HMM E-Value=1.1)                   29   2.6  
SB_6679| Best HMM Match : Keratin_B2 (HMM E-Value=0.0084)              29   3.4  
SB_36117| Best HMM Match : Rubredoxin (HMM E-Value=1.8)                29   3.4  
SB_2445| Best HMM Match : RGM_C (HMM E-Value=1.1)                      29   4.5  
SB_38889| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_10856| Best HMM Match : RGM_C (HMM E-Value=1.4)                     29   4.5  
SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_44681| Best HMM Match : DUF1109 (HMM E-Value=0.85)                  28   6.0  
SB_7216| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  
SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  
SB_21339| Best HMM Match : EGF (HMM E-Value=0.12)                      28   7.9  

>SB_10324| Best HMM Match : IFP_35_N (HMM E-Value=0.1)
          Length = 798

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +2

Query: 5  GGVIFIIFLVLLVWMICARSTKRK 76
          GG++ IIF+V++  MIC +  +RK
Sbjct: 14 GGLLLIIFIVIVTCMICKKKRRRK 37


>SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1361

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 298 VHFTIHTIMQPLLHVSLVVKVRHL 227
           V+FT H  ++P  H++L + VRHL
Sbjct: 349 VYFTTHAQIKPPKHIALAMSVRHL 372


>SB_29451| Best HMM Match : K_tetra (HMM E-Value=1.1)
          Length = 607

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +3

Query: 567 VTNCTILVLPASRIIIRNK 623
           VT CT+L+ P+SR++IR K
Sbjct: 506 VTYCTVLMSPSSRLVIREK 524


>SB_6679| Best HMM Match : Keratin_B2 (HMM E-Value=0.0084)
          Length = 292

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -1

Query: 404 RRYQSSLSYPGPRVSSTYRKDPPSFHRCWRLTSPSCSFYHSHHYATSPSCKSRC 243
           R Y+ S  +P PR S       PS  RC+R++    S  HS+  +       RC
Sbjct: 191 RSYRVSCVHPSPRRSYQVSCVQPSPKRCYRVSCVQPSPRHSYQVSCVQPSPRRC 244


>SB_36117| Best HMM Match : Rubredoxin (HMM E-Value=1.8)
          Length = 996

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 298 VHFTIHTIMQPLLHVSLVVKVRHL 227
           V+FT H  ++P  H+ L + VRHL
Sbjct: 254 VYFTTHARIKPPKHIGLAMSVRHL 277


>SB_2445| Best HMM Match : RGM_C (HMM E-Value=1.1)
          Length = 240

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 188 TYAHYYDDEEDGWEMPNFYNETYMKERLHNGVNGKMNSLARSNAS 322
           TY+ +  D++D     + +NE Y K R+    + +M+ + R NA+
Sbjct: 116 TYSDFSMDQQDADYFTDEHNERYAKSRIRARRSIEMDRMTRQNAT 160


>SB_38889| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 188 TYAHYYDDEEDGWEMPNFYNETYMKERLHNGVNGKMNSLARSNAS 322
           TY+ +  D++D     + +NE Y K R+    + +M+ + R NA+
Sbjct: 44  TYSDFSMDQQDADYFTDEHNERYAKSRIRARRSIEMDRMTRQNAT 88


>SB_10856| Best HMM Match : RGM_C (HMM E-Value=1.4)
          Length = 235

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 188 TYAHYYDDEEDGWEMPNFYNETYMKERLHNGVNGKMNSLARSNAS 322
           TY+ +  D++D     + +NE Y K R+    + +M+ + R NA+
Sbjct: 44  TYSDFSMDQQDADYFTDEHNERYAKSRIRARRSIEMDRMTRQNAT 88


>SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 821

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +2

Query: 203 YDDEEDGWEMPNFYNETYMKERLHNGVNGKMNSLARSNAS-IYGTKEDLYDRWKRHADPG 379
           YD++ DG +  ++ N  Y+ +   +  N   +  A    S +YG+KED  DR +R  +P 
Sbjct: 170 YDNKGDGDDYDDYDN--YVDDGDDDNDNKDDDDDAYERVSDLYGSKEDREDREEREDEPT 227

Query: 380 KKE-KTDSDGEGHRGASLEN 436
             +   DS  +G   +  EN
Sbjct: 228 APDGDDDSLNDGLEKSDSEN 247


>SB_44681| Best HMM Match : DUF1109 (HMM E-Value=0.85)
          Length = 377

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +2

Query: 152 PYAESIAPSHHSTYAHYYDDEEDGWEMPNFYNETYMKERLHN 277
           P+   I P +H  Y HYYD   D +   +++++ +  +  H+
Sbjct: 77  PHYHVIEPHYHDDY-HYYDHHYDDYHHDDYHHDYHHHDYHHD 117


>SB_7216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1400

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
 Frame = +2

Query: 173 PSHHSTYAHYYDDE-------EDGWEMPNFYN-ETYMKERLHNGVNGKMNSLARSNASIY 328
           P++ + Y +Y+DDE       +D    PN Y+ +     R +N    K NS  +S    +
Sbjct: 344 PTNVNEYGYYFDDEPTKKAQSQDDLLRPNAYHLDITAVSRKNNNQTVKDNSSVKSGV-FH 402

Query: 329 GTKEDLY-DRWKRHADPGKKEKTDSDGEGHRGASLEN 436
           G   + Y D+      P  + + DS       +++EN
Sbjct: 403 GDNNNQYTDKEIEDDSPSSESRIDSGISSSLESAIEN 439


>SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +2

Query: 212  EEDGWEMPNFYNETYMKERLHNGVNGKMNSLARSNASIYGTKEDLYDRWKRHAD 373
            +E+ W++P   +E        + V+ +   +   + + Y  KEDL  + K ++D
Sbjct: 1016 DEENWDLPEESDEENCDGETRSAVSNRKARMQNISETAYQAKEDLQAQSKGYSD 1069


>SB_21339| Best HMM Match : EGF (HMM E-Value=0.12)
          Length = 186

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +2

Query: 5   GGVIFIIFLVLLVWMICARSTKRKEPKKTLTPAIDQNGSQVNFY 136
           G VIF++ LVLL+W  C  S +   PK      ++Q+G+ +N +
Sbjct: 76  GAVIFVL-LVLLIWCCCC-SRRSSYPKD-----LEQDGTNLNTF 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,590,767
Number of Sequences: 59808
Number of extensions: 424176
Number of successful extensions: 1287
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)